Variant report

Variant	rs57672192
Chromosome Location	chr4:119809272-119809273
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10518319	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098461	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11722846	0.87[AFR][1000 genomes]
rs11725297	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11936305	0.85[ASN][1000 genomes]
rs11937710	0.88[AMR][1000 genomes]
rs12374349	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs58608417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60919368	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62326792	0.84[ASN][1000 genomes]
rs72671606	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv289598	chr4:119803765-119811852	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119791400-119809800	Weak transcription	Left Ventricle	heart
2	chr4:119799600-119809600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:119803000-119809800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:119803200-119809400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:119803200-119809400	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:119803200-119809600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:119803200-119809600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:119803200-119809800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:119805400-119809400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:119806200-119809600	Weak transcription	Psoas Muscle	Psoas
11	chr4:119806400-119809800	Weak transcription	Liver	Liver
12	chr4:119809200-119809400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:119809200-119809400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:119809200-119809400	Enhancers	HUVEC	blood vessel
15	chr4:119809200-119809600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
16	chr4:119809200-119809600	Enhancers	Rectal Smooth Muscle	rectum
17	chr4:119809200-119809600	Enhancers	HSMM	muscle
18	chr4:119809200-119810600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:119809200-119813800	Active TSS	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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