Variant report

Variant	rs576726510
Chromosome Location	chr5:101014240-101014241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:100926018..100926756-chr5:101014023..101014890,2	MCF-7	breast:
2	chr5:100726516..100727169-chr5:101014073..101014596,2	MCF-7	breast:
3	chr5:101013149..101015259-chr5:101019729..101021246,2	MCF-7	breast:
4	chr5:100977422..100978164-chr5:101014049..101014730,4	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528811	chr5:100424081-101218087	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2760962	chr5:100776199-101485581	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1030275	chr5:100867055-101190021	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1016464	chr5:100879176-101128705	Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1020846	chr5:100915406-101123526	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1023748	chr5:100916555-101247070	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1020461	chr5:100940280-101270305	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1026660	chr5:100943059-101247070	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1027957	chr5:100978562-101237003	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1020197	chr5:100994872-101285370	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1020503	chr5:100995507-101283156	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1028227	chr5:100995507-101285370	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1022231	chr5:100996356-101264354	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv537827	chr5:100996356-101264354	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1022423	chr5:100996556-101264215	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv537828	chr5:100996556-101264215	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv599181	chr5:101003812-101240273	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1027555	chr5:101012106-101095165	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1031247	chr5:101012106-101096015	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1019730	chr5:101012106-101096801	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1023751	chr5:101012106-101097362	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv1015491	chr5:101012106-101103009	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv1021678	chr5:101012106-101109871	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv2763932	chr5:101012118-101097374	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv1018516	chr5:101013963-101270305	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv537829	chr5:101013963-101270305	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:101013600-101014400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:101013600-101014400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:101013800-101014400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:101013800-101014400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr5:101013800-101014400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:101013800-101014400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr5:101013800-101014400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr5:101013800-101014400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:101013800-101014400	Enhancers	Aorta	Aorta
10	chr5:101013800-101014400	Enhancers	Esophagus	oesophagus
11	chr5:101013800-101014600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:101014000-101014400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr5:101014000-101014400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr5:101014000-101014400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:101014000-101014400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:101014000-101014400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr5:101014000-101014400	Enhancers	Fetal Lung	lung
18	chr5:101014200-101014400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr5:101014200-101014400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:101014200-101014400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:101014200-101014400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr5:101014200-101014400	Enhancers	Adipose Nuclei	Adipose
23	chr5:101014200-101014400	Enhancers	Brain Angular Gyrus	brain
24	chr5:101014200-101014400	Enhancers	Brain Anterior Caudate	brain
25	chr5:101014200-101014400	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
26	chr5:101014200-101014400	Enhancers	Brain Substantia Nigra	brain
27	chr5:101014200-101014400	Flanking Active TSS	Duodenum Mucosa	Duodenum
28	chr5:101014200-101014400	Enhancers	Fetal Stomach	stomach
29	chr5:101014200-101014400	Enhancers	Psoas Muscle	Psoas
30	chr5:101014200-101014400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr5:101014200-101014400	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr5:101014200-101014400	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr5:101014200-101014400	Flanking Active TSS	A549	lung
34	chr5:101014200-101014400	Flanking Bivalent TSS/Enh	Dnd41	blood
35	chr5:101014200-101014400	Enhancers	Hela-S3	cervix
36	chr5:101014200-101014400	Enhancers	NH-A	brain
37	chr5:101014200-101014400	Enhancers	Osteobl	bone
38	chr5:101014200-101014600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr5:101014200-101014600	Bivalent Enhancer	Liver	Liver
40	chr5:101014200-101014600	Active TSS	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links