Variant report

Variant	rs576747460
Chromosome Location	chr4:86746628-86746629
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr4:86746622-86746765	SH-SY5Y	brain:	n/a	n/a

Variant related genes	Relation type
ARHGAP24	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879518	chr4:86739805-86778943	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86728200-86747200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:86729400-86747400	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:86736200-86748600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:86737600-86763200	Weak transcription	Primary B cells from cord blood	blood
5	chr4:86740200-86747000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:86740200-86747200	Weak transcription	Fetal Lung	lung
7	chr4:86740200-86748600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:86740200-86748800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:86741800-86747200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:86743200-86748800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr4:86743600-86747200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:86743800-86747200	Weak transcription	Aorta	Aorta
13	chr4:86744200-86748600	Enhancers	Fetal Heart	heart
14	chr4:86744200-86748600	Enhancers	HSMM	muscle
15	chr4:86744400-86747000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr4:86744400-86747400	Enhancers	Fetal Kidney	kidney
17	chr4:86744600-86747000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr4:86744600-86748200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr4:86744600-86748600	Enhancers	Adipose Nuclei	Adipose
20	chr4:86744800-86747200	Weak transcription	Spleen	Spleen
21	chr4:86744800-86747400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:86744800-86747400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:86744800-86747400	Weak transcription	Brain Germinal Matrix	brain
24	chr4:86744800-86748600	Weak transcription	Pancreas	Pancrea
25	chr4:86745000-86747000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:86745000-86747200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr4:86745000-86747200	Weak transcription	Gastric	stomach
28	chr4:86745000-86747200	Weak transcription	Left Ventricle	heart
29	chr4:86745000-86747200	Weak transcription	Right Atrium	heart
30	chr4:86745000-86747200	Weak transcription	Small Intestine	intestine
31	chr4:86745000-86747400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:86745000-86747400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr4:86745000-86747400	Weak transcription	Right Ventricle	heart
34	chr4:86745600-86746800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr4:86745600-86747000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr4:86745600-86747400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr4:86745600-86748600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:86745600-86749400	Enhancers	HUVEC	blood vessel
39	chr4:86745800-86746800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr4:86745800-86746800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr4:86745800-86747000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr4:86745800-86747000	Weak transcription	HSMMtube	muscle
43	chr4:86745800-86747000	Weak transcription	Osteobl	bone
44	chr4:86745800-86747200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:86745800-86747200	Weak transcription	Stomach Mucosa	stomach
46	chr4:86745800-86747200	Enhancers	Stomach Smooth Muscle	stomach
47	chr4:86745800-86747200	Weak transcription	NHLF	lung
48	chr4:86745800-86747800	Enhancers	Primary B cells from peripheral blood	blood
49	chr4:86745800-86748600	Enhancers	NHDF-Ad	bronchial
50	chr4:86745800-86749400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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