Variant report

Variant	rs57675002
Chromosome Location	chr3:141200951-141200952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr3:141200923-141201474	SK-N-SH	brain:	n/a	chr3:141201246-141201257
2	JUND	chr3:141200427-141201628	SK-N-SH	brain:	n/a	chr3:141201246-141201257
3	GATA3	chr3:141200815-141201844	A549	lung:	n/a	n/a
4	POLR2A	chr3:141200913-141201584	HUVEC	blood vessel:	n/a	n/a
5	FOSL2	chr3:141200908-141201641	A549	lung:	n/a	n/a
6	MAFK	chr3:141200812-141201878	Hela-S3	cervix:	n/a	n/a
7	TCF12	chr3:141200909-141201734	A549	lung:	n/a	n/a
8	SP1	chr3:141200950-141201578	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:141029221..141032005-chr3:141199464..141200982,2	MCF-7	breast:
2	chr3:141198736..141201485-chr3:141204493..141207026,5	MCF-7	breast:
3	chr3:141197002..141202607-chr3:141203420..141209469,21	K562	blood:

Variant related genes	Relation type
RASA2	TF binding region
ENSG00000155903	Chromatin interaction

rs_ID	r²[population]
rs16851476	1.00[AMR][1000 genomes]
rs1896560	1.00[AMR][1000 genomes]
rs58702858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6778604	1.00[AMR][1000 genomes]
rs7645077	1.00[AMR][1000 genomes]
rs7647014	1.00[AMR][1000 genomes]

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141184600-141201000	Weak transcription	NHLF	lung
2	chr3:141195400-141204200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:141195600-141203600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr3:141196200-141201200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:141196600-141201200	Weak transcription	Osteobl	bone
6	chr3:141196600-141201400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:141196600-141201800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:141196600-141204400	Weak transcription	NH-A	brain
9	chr3:141197000-141201400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:141197200-141201200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:141198400-141202400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr3:141198400-141203800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:141198800-141201200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr3:141198800-141204600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:141199600-141204600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:141200200-141204600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:141200200-141204600	Enhancers	HepG2	liver
18	chr3:141200400-141201400	Weak transcription	Placenta	Placenta
19	chr3:141200600-141201400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:141200600-141202000	Enhancers	NHEK	skin
21	chr3:141200600-141202400	Enhancers	NHDF-Ad	bronchial
22	chr3:141200600-141202600	Enhancers	A549	lung
23	chr3:141200600-141202600	Enhancers	Hela-S3	cervix
24	chr3:141200600-141202800	Enhancers	HUVEC	blood vessel
25	chr3:141200800-141201800	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr3:141200800-141202000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:141200800-141202400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:141200800-141202400	Enhancers	HMEC	breast
29	chr3:141200800-141202600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:141200800-141202800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:141200800-141202800	Enhancers	Muscle Satellite Cultured Cells	--

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