Variant report

Variant	rs576753
Chromosome Location	chr6:44860282-44860283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16872990	1.00[AMR][1000 genomes]
rs16873022	1.00[AMR][1000 genomes]
rs2461015	0.89[AFR][1000 genomes]
rs486081	1.00[AMR][1000 genomes]
rs505772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs511167	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs512747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs514713	1.00[AMR][1000 genomes]
rs532415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs588291	1.00[AMR][1000 genomes]
rs589067	1.00[AMR][1000 genomes]
rs609243	1.00[AMR][1000 genomes]
rs632577	1.00[AMR][1000 genomes]
rs644060	1.00[AMR][1000 genomes]
rs644812	1.00[AMR][1000 genomes]
rs7747550	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44854600-44866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:44859200-44889400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:44860000-44860600	Enhancers	Right Ventricle	heart
4	chr6:44860000-44860800	Enhancers	Fetal Brain Male	brain
5	chr6:44860000-44860800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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