Variant report

Variant	rs576766485
Chromosome Location	chr6:128359385-128359386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
2	chr6:128293600-128374400	Weak transcription	Pancreas	Pancrea
3	chr6:128307800-128370800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:128311600-128387200	Weak transcription	NH-A	brain
5	chr6:128311800-128378400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:128314000-128367400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:128320800-128388200	Weak transcription	NHEK	skin
8	chr6:128326600-128388200	Weak transcription	HMEC	breast
9	chr6:128337400-128378400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:128341200-128374400	Weak transcription	HSMMtube	muscle
11	chr6:128342200-128371000	Weak transcription	Liver	Liver
12	chr6:128342600-128388600	Weak transcription	Fetal Brain Female	brain
13	chr6:128344600-128369200	Weak transcription	Ovary	ovary
14	chr6:128347000-128374400	Weak transcription	Esophagus	oesophagus
15	chr6:128347000-128405200	Weak transcription	Lung	lung
16	chr6:128350000-128370000	Weak transcription	Placenta	Placenta
17	chr6:128350000-128401000	Weak transcription	Small Intestine	intestine
18	chr6:128350400-128374200	Weak transcription	Gastric	stomach
19	chr6:128350600-128374200	Weak transcription	Fetal Stomach	stomach
20	chr6:128350800-128360200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:128351400-128378600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:128351400-128385000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:128351600-128371000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:128351600-128375000	Weak transcription	Brain Anterior Caudate	brain
25	chr6:128351800-128361400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:128352400-128378400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:128353200-128388400	Weak transcription	NHLF	lung
28	chr6:128353400-128374400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:128353400-128378600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:128353400-128378600	Weak transcription	Osteobl	bone
31	chr6:128353600-128359600	Weak transcription	Fetal Heart	heart
32	chr6:128353600-128369200	Weak transcription	Fetal Intestine Large	intestine
33	chr6:128353600-128370000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:128353600-128371000	Weak transcription	HepG2	liver
35	chr6:128353600-128374400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:128353600-128374400	Weak transcription	Aorta	Aorta
37	chr6:128353600-128378400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:128353600-128378600	Weak transcription	Left Ventricle	heart
39	chr6:128354000-128378400	Weak transcription	Primary B cells from cord blood	blood
40	chr6:128354200-128384800	Weak transcription	Fetal Lung	lung
41	chr6:128355200-128360800	Weak transcription	Fetal Thymus	thymus
42	chr6:128355400-128360800	Weak transcription	Thymus	Thymus
43	chr6:128355600-128385400	Weak transcription	Primary T cells from cord blood	blood
44	chr6:128357200-128361400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:128357600-128363000	Weak transcription	HSMM	muscle
46	chr6:128357600-128363200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:128358000-128359600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:128358000-128360000	Enhancers	NHDF-Ad	bronchial
49	chr6:128358200-128359600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:128358400-128371000	Weak transcription	Fetal Intestine Small	intestine

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