Variant report

Variant	rs576784075
Chromosome Location	chr2:54999714-54999715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:54999349..55001528-chr2:55002903..55005507,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33638	chr2:54765256-55109455	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1005449	chr2:54938633-55129503	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1844855	chr2:54987215-55012202	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1844727	chr2:54999712-55084583	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54997400-55000600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:54997400-55000800	Enhancers	HSMMtube	muscle
3	chr2:54997600-55000600	Enhancers	HSMM	muscle
4	chr2:54997600-55000800	Enhancers	HMEC	breast
5	chr2:54997600-55001400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:54997800-55000600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:54997800-55000600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:54997800-55000600	Enhancers	NHDF-Ad	bronchial
9	chr2:54998000-55000200	Enhancers	HUVEC	blood vessel
10	chr2:54998000-55000600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr2:54998200-54999800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:54998200-55000400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:54998200-55000400	Enhancers	Osteobl	bone
14	chr2:54998400-55000400	Enhancers	Hela-S3	cervix
15	chr2:54998400-55000600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:54998800-54999800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:54999200-54999800	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr2:54999200-55000200	Enhancers	NHLF	lung
19	chr2:54999200-55000600	Enhancers	Stomach Mucosa	stomach
20	chr2:54999400-54999800	Enhancers	NHEK	skin
21	chr2:54999600-54999800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr2:54999600-54999800	Flanking Active TSS	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links