Variant report

Variant	rs576803438
Chromosome Location	chr5:1645532-1645533
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:1208740..1209449-chr5:1644991..1645637,2	MCF-7	breast:
2	chr5:1380129..1381053-chr5:1644702..1645623,2	K562	blood:
3	chr5:1167994..1168516-chr5:1644707..1645648,2	MCF-7	breast:
4	chr5:1479406..1480370-chr5:1644706..1645695,7	K562	blood:
5	chr5:1601386..1602232-chr5:1644668..1645654,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250584	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933805	chr5:1450724-1941619	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv880740	chr5:1468287-1671200	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
3	nsv881554	chr5:1468287-1696932	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
4	nsv817407	chr5:1495354-2191460	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
5	nsv881096	chr5:1503610-1671200	Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
6	nsv880390	chr5:1612612-1653418	Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv880788	chr5:1629407-1671200	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv881328	chr5:1637461-1671200	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv596886	chr5:1644651-1655800	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv433369	chr5:1644735-1656054	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:1643600-1645600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
2	chr5:1644200-1645600	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
3	chr5:1644200-1645800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
4	chr5:1644400-1645600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
5	chr5:1644400-1645600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:1644400-1645800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr5:1644400-1645800	Bivalent Enhancer	Primary B cells from cord blood	blood
8	chr5:1644600-1645600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr5:1644600-1645600	Enhancers	Dnd41	blood
10	chr5:1644600-1645800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr5:1645000-1645600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr5:1645000-1645600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
13	chr5:1645000-1645600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
14	chr5:1645000-1645600	Bivalent Enhancer	Liver	Liver
15	chr5:1645000-1645600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:1645000-1645600	Bivalent Enhancer	Brain Substantia Nigra	brain
17	chr5:1645000-1645600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
18	chr5:1645000-1645600	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
19	chr5:1645000-1645600	Bivalent Enhancer	Fetal Intestine Large	intestine
20	chr5:1645000-1645600	Bivalent Enhancer	Fetal Thymus	thymus
21	chr5:1645000-1645600	ZNF genes & repeats	Right Atrium	heart
22	chr5:1645000-1645600	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
23	chr5:1645000-1645600	Flanking Bivalent TSS/Enh	Hela-S3	cervix
24	chr5:1645000-1645600	Flanking Bivalent TSS/Enh	HepG2	liver
25	chr5:1645200-1645600	Active TSS	H9 Cell Line	embryonic stem cell
26	chr5:1645200-1645600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:1645200-1645600	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr5:1645200-1645600	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr5:1645200-1645600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr5:1645200-1645600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
31	chr5:1645200-1645600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr5:1645200-1645600	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:1645200-1645600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr5:1645200-1645600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
35	chr5:1645200-1645600	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr5:1645200-1645600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
37	chr5:1645200-1645600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr5:1645200-1645600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr5:1645200-1645600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
40	chr5:1645200-1645600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr5:1645200-1645600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr5:1645200-1645600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:1645200-1645600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr5:1645200-1645600	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
45	chr5:1645200-1645600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
46	chr5:1645200-1645600	Active TSS	Aorta	Aorta
47	chr5:1645200-1645600	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr5:1645200-1645600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
49	chr5:1645200-1645600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
50	chr5:1645200-1645600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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