Variant report

Variant	rs576837358
Chromosome Location	chr9:96717278-96717279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr9:96709708-96717433	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr9:96716169-96718368	Hela-S3	cervix:	n/a	n/a
3	MAX	chr9:96716821-96717314	A549	lung:	n/a	n/a
4	CTBP2	chr9:96710652-96717425	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96709646..96715968-chr9:96715980..96721050,10	MCF-7	breast:

Variant related genes	Relation type
BARX1	TF binding region
ENSG00000235601	TF binding region
ENSG00000131668	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv824993	chr9:96699362-96725105	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3442102	chr9:96716156-96718704	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3412213	chr9:96716656-96718704	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96713800-96717400	Bivalent Enhancer	Fetal Muscle Leg	muscle
2	chr9:96713800-96717800	Bivalent Enhancer	Liver	Liver
3	chr9:96713800-96718400	Bivalent Enhancer	Lung	lung
4	chr9:96714200-96717400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
5	chr9:96714200-96717800	Enhancers	Pancreas	Pancrea
6	chr9:96715000-96718800	Bivalent Enhancer	Spleen	Spleen
7	chr9:96716000-96717400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
8	chr9:96716200-96718200	Active TSS	Osteobl	bone
9	chr9:96716400-96717800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
10	chr9:96716400-96718400	Active TSS	Hela-S3	cervix
11	chr9:96716400-96718600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr9:96716400-96718600	Bivalent/Poised TSS	Fetal Stomach	stomach
13	chr9:96716400-96718800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr9:96716600-96717600	Bivalent/Poised TSS	Esophagus	oesophagus
15	chr9:96716600-96717800	Bivalent Enhancer	Primary B cells from cord blood	blood
16	chr9:96716600-96717800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:96716800-96717400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:96716800-96717800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
19	chr9:96716800-96718400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
20	chr9:96716800-96718400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr9:96716800-96718400	Active TSS	A549	lung
22	chr9:96717000-96717400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr9:96717000-96717400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:96717000-96717400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:96717000-96717400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:96717000-96717400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
27	chr9:96717000-96717800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
28	chr9:96717000-96717800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
29	chr9:96717000-96717800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
30	chr9:96717000-96717800	Bivalent/Poised TSS	Fetal Brain Female	brain
31	chr9:96717000-96717800	Bivalent/Poised TSS	HMEC	breast
32	chr9:96717000-96718000	Bivalent/Poised TSS	Psoas Muscle	Psoas
33	chr9:96717000-96718000	Active TSS	Right Atrium	heart
34	chr9:96717000-96718200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr9:96717000-96718200	Bivalent/Poised TSS	Ovary	ovary
36	chr9:96717000-96718400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
37	chr9:96717000-96718800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
38	chr9:96717000-96719200	Active TSS	Stomach Smooth Muscle	stomach
39	chr9:96717200-96717400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr9:96717200-96717400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr9:96717200-96717400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:96717200-96717400	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
43	chr9:96717200-96717600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr9:96717200-96717600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
45	chr9:96717200-96717600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:96717200-96717600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr9:96717200-96717600	Weak transcription	Gastric	stomach
48	chr9:96717200-96717800	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr9:96717200-96717800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
50	chr9:96717200-96717800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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