Variant report

Variant	rs57684306
Chromosome Location	chr17:33850935-33850936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12051819	0.86[ASN][1000 genomes]
rs7224653	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv519981	chr17:33841737-33864479	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv574754	chr17:33841737-33881631	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33843200-33852200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr17:33846400-33852000	Enhancers	Primary T cells from cord blood	blood
3	chr17:33846800-33851600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr17:33847600-33851400	Enhancers	Primary hematopoietic stem cells	blood
5	chr17:33847600-33851600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr17:33848800-33851800	Genic enhancers	Primary T cells fromperipheralblood	blood
7	chr17:33848800-33851800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr17:33848800-33851800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr17:33849000-33851200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr17:33849000-33851400	Weak transcription	Fetal Thymus	thymus
11	chr17:33849200-33851000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
12	chr17:33849200-33851600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr17:33849400-33852600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr17:33849800-33851200	Weak transcription	Spleen	Spleen
15	chr17:33849800-33851600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr17:33849800-33851600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr17:33849800-33851600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr17:33849800-33855000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr17:33850000-33851400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr17:33850000-33851600	Genic enhancers	Dnd41	blood
21	chr17:33850400-33851600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr17:33850600-33851400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr17:33850600-33857800	Weak transcription	Fetal Lung	lung
24	chr17:33850800-33851600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr17:33850800-33851800	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr17:33850800-33853600	Weak transcription	GM12878-XiMat	blood

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