Variant report

Variant	rs576849875
Chromosome Location	chr7:21480364-21480365
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:21478973..21480916-chr7:21483691..21486071,2	K562	blood:
2	chr7:21466062..21469694-chr7:21474540..21481280,7	MCF-7	breast:
3	chr7:21465833..21470662-chr7:21478893..21484053,5	K562	blood:

Variant related genes	Relation type
ENSG00000105866	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1028434	chr7:21468437-21636671	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv971483	chr7:21479694-21488485	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21468400-21490600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:21468400-21497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:21468600-21488600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr7:21468600-21495600	Weak transcription	Fetal Intestine Large	intestine
5	chr7:21468800-21489000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:21468800-21493600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:21469000-21483800	Weak transcription	Adipose Nuclei	Adipose
8	chr7:21470000-21488600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:21470000-21490400	Weak transcription	Fetal Kidney	kidney
10	chr7:21470000-21497800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:21470200-21488600	Weak transcription	Gastric	stomach
12	chr7:21470200-21490600	Weak transcription	Psoas Muscle	Psoas
13	chr7:21470200-21494400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr7:21470400-21481000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr7:21470400-21488600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:21470400-21490600	Weak transcription	Pancreas	Pancrea
17	chr7:21470400-21494600	Weak transcription	Fetal Stomach	stomach
18	chr7:21470400-21516600	Weak transcription	Liver	Liver
19	chr7:21470400-21536400	Weak transcription	Esophagus	oesophagus
20	chr7:21470600-21490800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr7:21471600-21488400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:21471800-21484000	Weak transcription	HUVEC	blood vessel
23	chr7:21471800-21486600	Weak transcription	Aorta	Aorta
24	chr7:21472000-21483800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:21472000-21483800	Weak transcription	Fetal Lung	lung
26	chr7:21472000-21487200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr7:21472000-21488600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr7:21472000-21488800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:21472000-21489800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr7:21472000-21495200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr7:21472000-21495200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr7:21472200-21482800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:21472800-21488200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:21472800-21488400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr7:21472800-21488600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr7:21472800-21490400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr7:21472800-21490400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr7:21472800-21490600	Weak transcription	Left Ventricle	heart
39	chr7:21472800-21490600	Weak transcription	Lung	lung
40	chr7:21472800-21492000	Weak transcription	Small Intestine	intestine
41	chr7:21472800-21506000	Weak transcription	Right Ventricle	heart
42	chr7:21473200-21486600	Weak transcription	Ovary	ovary
43	chr7:21473200-21488400	Weak transcription	Dnd41	blood
44	chr7:21473400-21480400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr7:21473600-21489600	Weak transcription	Fetal Brain Male	brain
46	chr7:21474200-21493400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr7:21474400-21481400	Strong transcription	Primary B cells from cord blood	blood
48	chr7:21474800-21497200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr7:21474800-21520600	Weak transcription	Brain Angular Gyrus	brain
50	chr7:21475400-21483000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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