Variant report

Variant	rs576871029
Chromosome Location	chr11:36371809-36371810
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv3339108	chr11:36371401-36374249	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36364400-36381800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:36365200-36374000	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:36365200-36374200	Weak transcription	Brain Substantia Nigra	brain
4	chr11:36367000-36375800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:36367400-36375200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:36367400-36375600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:36367400-36375800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:36367400-36381200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:36367600-36375800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:36367800-36375800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:36369400-36374200	Weak transcription	GM12878-XiMat	blood
12	chr11:36369600-36375400	Weak transcription	Fetal Intestine Small	intestine
13	chr11:36371000-36372000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:36371000-36372000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:36371000-36372000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:36371000-36372000	Enhancers	Adipose Nuclei	Adipose
17	chr11:36371000-36372000	Enhancers	HUVEC	blood vessel
18	chr11:36371400-36374000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:36371400-36376200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:36371400-36376600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:36371600-36372000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
22	chr11:36371600-36373600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:36371600-36374200	Weak transcription	Brain Anterior Caudate	brain
24	chr11:36371600-36375400	Weak transcription	Fetal Intestine Large	intestine
25	chr11:36371800-36372000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:36371800-36372000	Enhancers	Gastric	stomach
27	chr11:36371800-36372000	Enhancers	Sigmoid Colon	Sigmoid Colon

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