Variant report

Variant	rs576872701
Chromosome Location	chr18:25241694-25241695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv962948	chr18:25241568-25248773	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25237400-25245400	Weak transcription	HSMM	muscle
2	chr18:25237800-25245400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr18:25240200-25249200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr18:25240400-25243600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:25240600-25243200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr18:25240600-25246600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr18:25240800-25243200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr18:25240800-25243400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr18:25240800-25243400	Enhancers	Liver	Liver
10	chr18:25241000-25241800	Enhancers	HSMMtube	muscle
11	chr18:25241000-25242400	Enhancers	Brain Substantia Nigra	brain
12	chr18:25241000-25243400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr18:25241200-25241800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr18:25241200-25242600	Enhancers	Brain Hippocampus Middle	brain
15	chr18:25241200-25243200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr18:25241400-25241800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr18:25241400-25241800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr18:25241400-25241800	Flanking Active TSS	Brain Germinal Matrix	brain
19	chr18:25241400-25242000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr18:25241400-25242200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr18:25241400-25242800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr18:25241400-25243200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr18:25241600-25241800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr18:25241600-25242000	Enhancers	H9 Cell Line	embryonic stem cell
25	chr18:25241600-25242000	Active TSS	Brain Anterior Caudate	brain
26	chr18:25241600-25242600	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links