Variant report

Variant	rs576878989
Chromosome Location	chr5:80972254-80972255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:80971757..80974379-chr5:80975193..80977880,3	K562	blood:
2	chr5:80965614..80968004-chr5:80970828..80973570,3	K562	blood:
3	chr5:80970290..80973257-chr5:80975148..80979422,4	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882233	chr5:80849084-81049187	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv882235	chr5:80909132-81006061	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830361	chr5:80909811-81080409	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882236	chr5:80930992-80999768	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882237	chr5:80938489-81006061	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3345018	chr5:80972245-80998709	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3330268	chr5:80972245-81001669	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80921200-80983000	Weak transcription	Aorta	Aorta
2	chr5:80945600-80985400	Weak transcription	Fetal Kidney	kidney
3	chr5:80946200-80972800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:80950200-80975600	Weak transcription	Thymus	Thymus
5	chr5:80963400-80983200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:80963400-80983400	Weak transcription	Left Ventricle	heart
7	chr5:80963400-80983800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:80967400-80980000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr5:80967400-80991400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr5:80967800-80973600	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:80969400-80972600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr5:80969800-80973400	Weak transcription	Fetal Heart	heart
13	chr5:80970600-80972600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:80971000-80972600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:80971000-80972600	Strong transcription	Fetal Thymus	thymus
16	chr5:80971000-80972800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr5:80971200-80995800	Weak transcription	HSMMtube	muscle
18	chr5:80971800-80972400	Enhancers	Psoas Muscle	Psoas
19	chr5:80972000-80973800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:80972200-80972600	Enhancers	Ovary	ovary
21	chr5:80972200-80972600	Genic enhancers	Dnd41	blood
22	chr5:80972200-80974400	Weak transcription	Primary T cells from cord blood	blood

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