Variant report

Variant	rs576886824
Chromosome Location	chr10:38445920-38445921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:38445916-38445966	GM12891	blood:	n/a
2	chr10:38445916-38445966	HEK293	kidney:	embryo
3	chr10:38445916-38445966	HCM	heart:	n/a
4	chr10:38445916-38445966	K562	blood:	n/a
5	chr10:38445916-38445966	HCT-116	colon:	n/a
6	chr10:38445916-38445966	ovcar-3	ovarian:	n/a
7	chr10:38445916-38445966	Hela-S3	cervix:	n/a
8	chr10:38445916-38445966	ECC-1	luminal epithelium:	n/a
9	chr10:38445916-38445966	NHBE	bronchial:	n/a
10	chr10:38445916-38445966	HepG2	liver:	n/a
11	chr10:38445916-38445966	HPAEpiC	pulmonary alveolar:	n/a
12	chr10:38445916-38445966	Caco-2	colon:	n/a
13	chr10:38445916-38445966	NH-A	brain:	n/a
14	chr10:38445916-38445966	HRPEpiC	eye:	n/a
15	chr10:38445916-38445966	NT2-D1	testis:	n/a
16	chr10:38445916-38445966	HCF	heart:	n/a
17	chr10:38445916-38445966	BE2_C	brain:	n/a
18	chr10:38445916-38445966	PANC-1	pancreas:	n/a
19	chr10:38445916-38445966	LNCaP	prostate:	n/a
20	chr10:38445916-38445966	CMK	blood:	n/a
21	chr10:38445916-38445966	GM12892	blood:	n/a
22	chr10:38445916-38445966	HNPCEpiC	eye:	n/a
23	chr10:38445916-38445966	PFSK-1	brain:	n/a
24	chr10:38445916-38445966	AoSMC	blood vessel:	n/a
25	chr10:38445916-38445966	ProgFib	skin:	n/a
26	chr10:38445916-38445966	AG04450	lung:	fetal
27	chr10:38445916-38445966	U87	brain:	n/a
28	chr10:38445916-38445966	GM06990	blood:	n/a
29	chr10:38445916-38445966	T-47D	breast:	n/a
30	chr10:38445916-38445966	RPTEC	kidney:	n/a
31	chr10:38445916-38445966	PrEC	prostate:	n/a
32	chr10:38445916-38445966	Hepatocyte	liver:	n/a
33	chr10:38445916-38445966	GM12878	blood:	n/a
34	chr10:38445916-38445966	BJ	skin:	n/a
35	chr10:38445916-38445966	HRCEpiC	kidney:	n/a
36	chr10:38445916-38445966	Jurkat	blood:	n/a
37	chr10:38445916-38445966	HAEpiC	amniotic membrane:	n/a
38	chr10:38445916-38445966	NHDF-neo	bronchial:	n/a
39	chr10:38445916-38445966	HUVEC	blood vessel:	n/a
40	chr10:38445916-38445966	H1-hESC	embryonic stem cell:	embryo
41	chr10:38445916-38445966	HL-60	blood:	n/a
42	chr10:38445916-38445966	A549	lung:	n/a
43	chr10:38445916-38445966	AG09319	gingival:	n/a
44	chr10:38445916-38445966	SK-N-SH_RA	brain:	n/a
45	chr10:38445916-38445966	GM19239	blood:	n/a
46	chr10:38445916-38445966	HIPEpiC	eye:	n/a
47	chr10:38445916-38445966	SK-N-MC	brain:	n/a
48	chr10:38445916-38445966	HCPEpiC	choroid plexus:	n/a
49	chr10:38445916-38445966	HMEC	breast:	n/a
50	chr10:38445916-38445966	MCF10A-Er-Src	breast:	n/a

No data

Variant related genes	Relation type
ENSG00000225965	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv540566	chr10:38301001-38680127	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv550419	chr10:38311777-38501654	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv895031	chr10:38402789-38464886	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv895032	chr10:38427708-38498909	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv895033	chr10:38432348-38537070	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv524757	chr10:38445002-38451641	ZNF genes & repeats Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38445600-38446200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links