Variant report

Variant	rs576893
Chromosome Location	chr6:12729265-12729266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1412748	1.00[CHB][hapmap]
rs476337	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs510620	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs511574	0.87[CHD][hapmap]
rs522117	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs522582	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs522923	0.96[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs524453	0.92[CEU][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs570295	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.84[LWK][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap]
rs6458439	0.89[CEU][hapmap]
rs9395162	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12710800-12729600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:12716800-12729600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:12725200-12729400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:12725400-12729400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:12725400-12729600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:12725400-12729600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:12725600-12729400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:12725600-12729600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:12725800-12729600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:12728800-12730400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:12729000-12730200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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