Variant report

Variant	rs57692605
Chromosome Location	chr15:56101232-56101233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10518822	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11071219	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11635701	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11853766	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12439615	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12594225	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2008672	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2014213	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2414442	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28486084	0.83[ASN][1000 genomes]
rs28673063	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28807987	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4316693	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4395015	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4415961	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4605102	0.80[EUR][1000 genomes]
rs56179937	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs57725406	0.90[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs59983763	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs60503643	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62046598	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7182436	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8030099	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs8030626	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8034279	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs8034296	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs8038986	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs933996	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833017	chr15:55965957-56157912	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3366380	chr15:56003224-56141650	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1052495	chr15:56013617-56102164	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56095800-56128600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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