Variant report

Variant	rs576930940
Chromosome Location	chr4:124780997-124780998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv432623	chr4:124780908-124851395	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124776400-124781400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:124777200-124781000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:124778000-124781000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:124778600-124781400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:124778600-124791400	Weak transcription	Left Ventricle	heart
6	chr4:124778600-124791600	Weak transcription	Psoas Muscle	Psoas
7	chr4:124778600-124792400	Weak transcription	Right Atrium	heart
8	chr4:124778600-124797600	Weak transcription	Ovary	ovary
9	chr4:124778800-124784600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:124779600-124790800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:124779800-124791400	Weak transcription	Right Ventricle	heart
12	chr4:124780000-124789800	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:124780000-124792600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:124780200-124784000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:124780400-124783200	Weak transcription	Fetal Intestine Large	intestine
16	chr4:124780400-124784000	Weak transcription	Fetal Intestine Small	intestine
17	chr4:124780400-124784000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr4:124780400-124784800	Weak transcription	Fetal Lung	lung
19	chr4:124780400-124790400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:124780800-124781000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:124780800-124781200	Enhancers	HSMM	muscle
22	chr4:124780800-124782600	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links