Variant report

Variant	rs576990800
Chromosome Location	chr19:36435258-36435259
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36434768..36437556-chr19:36487858..36489977,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
4	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
5	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
6	nsv833812	chr19:36331913-36507594	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv833813	chr19:36341181-36499431	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
8	esv3426319	chr19:36434362-36436860	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36428800-36437000	Weak transcription	HSMMtube	muscle
2	chr19:36429000-36438000	Weak transcription	Osteobl	bone
3	chr19:36429200-36437000	Weak transcription	Psoas Muscle	Psoas
4	chr19:36429200-36438600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:36429400-36435400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr19:36429400-36436200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr19:36429400-36438000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr19:36429400-36438000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr19:36429400-36440000	Weak transcription	A549	lung
10	chr19:36429600-36435400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr19:36429600-36436200	Weak transcription	NHEK	skin
12	chr19:36429600-36436600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr19:36429600-36438000	Strong transcription	Fetal Stomach	stomach
14	chr19:36429600-36439600	Weak transcription	Fetal Lung	lung
15	chr19:36429600-36444200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr19:36429800-36438000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr19:36429800-36438000	Weak transcription	Colon Smooth Muscle	Colon
18	chr19:36429800-36438400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr19:36429800-36438600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr19:36429800-36438600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr19:36429800-36441000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr19:36430000-36450000	Weak transcription	Right Atrium	heart
23	chr19:36430200-36436800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr19:36430400-36435600	Strong transcription	Dnd41	blood
25	chr19:36430600-36436600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr19:36430800-36438400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr19:36431000-36438000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr19:36431400-36435400	Weak transcription	Fetal Intestine Large	intestine
29	chr19:36431800-36435400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr19:36431800-36437600	Weak transcription	Left Ventricle	heart
31	chr19:36431800-36437800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr19:36431800-36437800	Weak transcription	Colonic Mucosa	Colon
33	chr19:36431800-36438000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr19:36431800-36438000	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr19:36431800-36438000	Weak transcription	NHLF	lung
36	chr19:36431800-36438200	Weak transcription	Brain Angular Gyrus	brain
37	chr19:36431800-36438600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr19:36431800-36440200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr19:36431800-36440400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr19:36431800-36442800	Weak transcription	Thymus	Thymus
41	chr19:36431800-36443000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr19:36432000-36438000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr19:36432200-36435600	Genic enhancers	Brain Germinal Matrix	brain
44	chr19:36432400-36437600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr19:36432400-36440200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr19:36433000-36435400	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr19:36433000-36435600	Strong transcription	Brain Anterior Caudate	brain
48	chr19:36433000-36436200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr19:36433000-36436400	Strong transcription	Primary T cells from cord blood	blood
50	chr19:36433000-36436600	Strong transcription	Lung	lung

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