Variant report

Variant	rs576997600
Chromosome Location	chr19:35846495-35846496
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:35845749-35846852	GM12878	blood:	n/a	n/a
2	POLR2A	chr19:35845758-35846643	GM12878	blood:	n/a	n/a
3	POLR2A	chr19:35845794-35846694	GM12892	blood:	n/a	n/a
4	POLR2A	chr19:35846112-35846691	GM12891	blood:	n/a	n/a
5	POLR2A	chr19:35846027-35846779	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:35842803..35847555-chr19:35958346..35962291,5	MCF-7	breast:
2	chr19:35842321..35845191-chr19:35845202..35847710,3	MCF-7	breast:

Variant related genes	Relation type
FFAR3	TF binding region
ENSG00000126266	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
8	esv1828194	chr19:35812566-35865695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1067129	chr19:35827036-35849310	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
10	nsv173	chr19:35837405-35866835	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv2471	chr19:35837405-35903115	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	esv3399851	chr19:35841723-35854402	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	esv2762943	chr19:35846150-35861848	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35836800-35848000	Weak transcription	Brain Substantia Nigra	brain
2	chr19:35838200-35849200	Weak transcription	Brain Hippocampus Middle	brain
3	chr19:35839200-35848600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr19:35839200-35848800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr19:35840800-35848400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr19:35843600-35847000	Enhancers	HepG2	liver
7	chr19:35843600-35848000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr19:35843800-35848600	Weak transcription	Gastric	stomach
9	chr19:35844000-35846800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr19:35844000-35848400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr19:35844000-35848800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr19:35844000-35849000	Weak transcription	Ovary	ovary
13	chr19:35844000-35849000	Weak transcription	Spleen	Spleen
14	chr19:35844200-35846600	Weak transcription	Liver	Liver
15	chr19:35844200-35847200	Enhancers	GM12878-XiMat	blood
16	chr19:35844200-35848200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr19:35844200-35848400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr19:35844200-35848400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr19:35844200-35848400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr19:35844200-35848800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr19:35844200-35849000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr19:35844200-35849000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr19:35844600-35847400	Weak transcription	Primary B cells from cord blood	blood
24	chr19:35844600-35849000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr19:35844800-35846800	Weak transcription	Fetal Stomach	stomach
26	chr19:35845000-35848200	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr19:35845000-35848400	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr19:35846200-35847200	Bivalent Enhancer	Placenta	Placenta
29	chr19:35846200-35847600	Enhancers	Fetal Lung	lung
30	chr19:35846400-35847000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr19:35846400-35847200	Enhancers	Adipose Nuclei	Adipose
32	chr19:35846400-35847600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr19:35846400-35848200	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr19:35846400-35848800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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