Variant report

Variant	rs577008922
Chromosome Location	chr6:33541455-33541456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462896	chr6:33534880-33588147	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv602833	chr6:33534880-33588147	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv519079	chr6:33540209-33542538	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33539200-33541600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:33539200-33547200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:33539400-33541600	Weak transcription	Ovary	ovary
4	chr6:33539400-33541800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:33539600-33541600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:33539600-33541600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:33539600-33541600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:33539600-33541800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:33539600-33541800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:33539600-33541800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:33539600-33541800	Weak transcription	Small Intestine	intestine
12	chr6:33539600-33542000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:33539600-33542000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:33539600-33542000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:33539600-33542000	Weak transcription	HUVEC	blood vessel
16	chr6:33539600-33542800	Weak transcription	A549	lung
17	chr6:33539600-33546200	Weak transcription	NHDF-Ad	bronchial
18	chr6:33539600-33546400	Weak transcription	Fetal Brain Male	brain
19	chr6:33539600-33547000	Weak transcription	Fetal Kidney	kidney
20	chr6:33539800-33541600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:33539800-33541600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:33539800-33541600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:33539800-33541600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr6:33539800-33541600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:33539800-33541600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:33539800-33541600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:33539800-33541600	Weak transcription	Fetal Intestine Large	intestine
28	chr6:33539800-33541600	Weak transcription	Gastric	stomach
29	chr6:33539800-33541600	Weak transcription	Pancreas	Pancrea
30	chr6:33539800-33541800	Weak transcription	Liver	Liver
31	chr6:33539800-33541800	Weak transcription	Esophagus	oesophagus
32	chr6:33539800-33541800	Weak transcription	Fetal Lung	lung
33	chr6:33539800-33542000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:33539800-33542000	Weak transcription	HepG2	liver
35	chr6:33539800-33542000	Weak transcription	HSMMtube	muscle
36	chr6:33539800-33542000	Weak transcription	NH-A	brain
37	chr6:33539800-33542200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:33539800-33542400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:33539800-33544400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:33539800-33544400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:33539800-33545400	Strong transcription	Fetal Intestine Small	intestine
42	chr6:33539800-33546400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:33539800-33547000	Weak transcription	Psoas Muscle	Psoas
44	chr6:33540000-33541600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:33540000-33541600	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr6:33540000-33541600	Weak transcription	HSMM	muscle
47	chr6:33540000-33541800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:33540000-33541800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr6:33540000-33541800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:33540000-33542000	Weak transcription	Muscle Satellite Cultured Cells	--

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