Variant report

Variant	rs57701495
Chromosome Location	chr10:98051151-98051152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61741051	1.00[AMR][1000 genomes]
rs74151299	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98045600-98052800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:98045600-98053000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:98048200-98052800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr10:98048200-98053000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:98048400-98052800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:98048400-98053200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:98048400-98053600	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:98048600-98053400	Weak transcription	Liver	Liver
9	chr10:98048600-98058800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:98048800-98053400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:98049800-98051200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:98049800-98051600	Flanking Active TSS	GM12878-XiMat	blood
13	chr10:98050400-98053200	Weak transcription	Thymus	Thymus
14	chr10:98050600-98059200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr10:98050800-98052400	Weak transcription	Fetal Thymus	thymus
16	chr10:98050800-98052400	Weak transcription	Dnd41	blood
17	chr10:98050800-98052800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:98051000-98053600	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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