Variant report

Variant	rs577017758
Chromosome Location	chr4:57772460-57772461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv822562	chr4:57768655-57779715	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	esv12676	chr4:57772270-57775584	Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57761600-57773000	Weak transcription	Right Atrium	heart
2	chr4:57771800-57773200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:57772000-57772600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
4	chr4:57772000-57772800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:57772000-57772800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr4:57772000-57773000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr4:57772000-57773400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr4:57772200-57772600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr4:57772200-57773000	Enhancers	Primary T cells from cord blood	blood
10	chr4:57772200-57773200	Enhancers	Primary B cells from cord blood	blood
11	chr4:57772400-57772600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:57772400-57772600	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr4:57772400-57772600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
14	chr4:57772400-57772600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr4:57772400-57772600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:57772400-57772800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links