Variant report

Variant	rs577021238
Chromosome Location	chr4:149047444-149047445
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149004600-149052400	Weak transcription	Esophagus	oesophagus
2	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
3	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
4	chr4:149030800-149067000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:149035400-149048200	Weak transcription	Brain Angular Gyrus	brain
6	chr4:149039400-149069400	Weak transcription	Colonic Mucosa	Colon
7	chr4:149040600-149083200	Weak transcription	Gastric	stomach
8	chr4:149041400-149067600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:149041600-149061400	Weak transcription	Fetal Stomach	stomach
11	chr4:149041600-149069600	Weak transcription	Brain Anterior Caudate	brain
12	chr4:149041800-149074400	Weak transcription	Lung	lung
13	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr4:149046400-149076600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr4:149046400-149085800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:149046600-149048200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr4:149046600-149055400	Weak transcription	Brain Substantia Nigra	brain
18	chr4:149046600-149066600	Weak transcription	Ovary	ovary
19	chr4:149046600-149075600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr4:149046600-149087400	Weak transcription	Aorta	Aorta
21	chr4:149047000-149051800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr4:149047000-149066800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr4:149047000-149077200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr4:149047400-149049200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:149047400-149049400	Weak transcription	Liver	Liver
26	chr4:149047400-149049800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr4:149047400-149062600	Weak transcription	Fetal Muscle Leg	muscle
28	chr4:149047400-149066000	Weak transcription	Pancreas	Pancrea
29	chr4:149047400-149067200	Weak transcription	Left Ventricle	heart
30	chr4:149047400-149083800	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links