Variant report

Variant	rs57705252
Chromosome Location	chr14:64408532-64408533
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64407990..64410133-chr14:64411071..64414129,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs35920722	1.00[AMR][1000 genomes]
rs35960129	1.00[AMR][1000 genomes]
rs41319545	1.00[AMR][1000 genomes]
rs58063463	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60136116	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv564904	chr14:64346190-64416898	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1793389	chr14:64346190-64457224	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64365000-64430200	Weak transcription	Fetal Brain Male	brain
2	chr14:64376000-64416200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr14:64378000-64416200	Weak transcription	Fetal Lung	lung
4	chr14:64378400-64416000	Weak transcription	Primary B cells from cord blood	blood
5	chr14:64379800-64409000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr14:64387000-64416400	Weak transcription	Aorta	Aorta
7	chr14:64390200-64416400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr14:64390600-64418800	Weak transcription	HepG2	liver
9	chr14:64390800-64408600	Weak transcription	Fetal Intestine Large	intestine
10	chr14:64392000-64409000	Weak transcription	Fetal Intestine Small	intestine
11	chr14:64393200-64419800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:64393800-64414800	Weak transcription	Fetal Muscle Leg	muscle
13	chr14:64395000-64491000	Weak transcription	Psoas Muscle	Psoas
14	chr14:64396000-64418600	Weak transcription	Fetal Heart	heart
15	chr14:64397400-64409000	Weak transcription	Fetal Stomach	stomach
16	chr14:64400000-64409000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr14:64400000-64416400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr14:64400000-64419800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr14:64400400-64409600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr14:64400800-64417800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr14:64401000-64416200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr14:64401000-64416400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr14:64401400-64408600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr14:64401400-64408600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr14:64401400-64408600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr14:64401400-64408800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:64401400-64409000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:64401400-64430200	Weak transcription	Stomach Mucosa	stomach
29	chr14:64401600-64416600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:64401600-64427800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr14:64403000-64408600	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr14:64403000-64408800	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr14:64403600-64432800	Weak transcription	Lung	lung
34	chr14:64404200-64416200	Weak transcription	Right Ventricle	heart
35	chr14:64404200-64416600	Weak transcription	Adipose Nuclei	Adipose
36	chr14:64405000-64423400	Weak transcription	HSMM	muscle
37	chr14:64405400-64409600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:64405600-64408800	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr14:64405600-64409000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr14:64405600-64416200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr14:64405600-64416200	Weak transcription	NHEK	skin
42	chr14:64405600-64418800	Weak transcription	HMEC	breast
43	chr14:64405800-64409200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr14:64405800-64416200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr14:64405800-64418800	Weak transcription	Small Intestine	intestine
46	chr14:64406000-64416200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr14:64406000-64416600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:64406000-64416600	Weak transcription	Gastric	stomach
49	chr14:64406000-64416600	Weak transcription	Pancreas	Pancrea
50	chr14:64406000-64416600	Weak transcription	Spleen	Spleen

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