Variant report

Variant	rs577072176
Chromosome Location	chr6:75958271-75958272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:75955366..75958465-chr6:75960762..75964023,3	K562	blood:
2	chr6:75952010..75957701-chr6:75957886..75965537,16	MCF-7	breast:
3	chr6:75952173..75955375-chr6:75955381..75959896,5	K562	blood:

Variant related genes	Relation type
ENSG00000112695	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016804	chr6:75775846-76188585	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538310	chr6:75775846-76188585	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv463155	chr6:75789526-75980419	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv603762	chr6:75789526-75980419	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1024079	chr6:75848556-76238519	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv1027915	chr6:75893542-76510113	Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	nsv538311	chr6:75893542-76510113	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
8	nsv603763	chr6:75923605-76009426	Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	esv3412471	chr6:75956857-75959405	Weak transcription Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3414103	chr6:75957082-75959105	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv2448573	chr6:75957192-75958997	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv9189	chr6:75957519-75958372	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3323327	chr6:75957582-75958630	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv1957437	chr6:75957588-75958311	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75953800-75978200	Weak transcription	Gastric	stomach
2	chr6:75953800-75982200	Weak transcription	Spleen	Spleen
3	chr6:75954000-75974000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:75954200-75959600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:75954200-75961200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:75954200-75961400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:75954200-75962800	Weak transcription	Left Ventricle	heart
8	chr6:75954200-75963400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:75954200-75963400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:75954200-75963800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:75954200-75964800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:75954200-75965000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:75954200-75965200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:75954200-75966400	Weak transcription	Aorta	Aorta
15	chr6:75954200-75967200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr6:75954200-75969400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:75954200-75971600	Weak transcription	K562	blood
18	chr6:75954200-75973200	Weak transcription	Psoas Muscle	Psoas
19	chr6:75954200-75978000	Weak transcription	Pancreas	Pancrea
20	chr6:75954200-75978000	Weak transcription	Small Intestine	intestine
21	chr6:75954200-75978000	Weak transcription	Stomach Mucosa	stomach
22	chr6:75954200-75978200	Weak transcription	Esophagus	oesophagus
23	chr6:75954200-75978400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:75954400-75959000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:75954400-75959000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:75954400-75959000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:75954400-75959400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:75954400-75959400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr6:75954400-75960200	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr6:75954400-75962400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:75954400-75962800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:75954400-75962800	Weak transcription	Liver	Liver
33	chr6:75954400-75962800	Weak transcription	HUVEC	blood vessel
34	chr6:75954400-75962800	Weak transcription	NH-A	brain
35	chr6:75954400-75963000	Weak transcription	Lung	lung
36	chr6:75954400-75963200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:75954400-75963400	Weak transcription	Fetal Muscle Leg	muscle
38	chr6:75954400-75963400	Weak transcription	Placenta	Placenta
39	chr6:75954400-75963400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:75954400-75963600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:75954400-75963800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:75954400-75965000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:75954400-75965000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:75954400-75965000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:75954400-75965000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr6:75954400-75965600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:75954400-75965600	Weak transcription	Ovary	ovary
48	chr6:75954400-75967400	Weak transcription	Brain Angular Gyrus	brain
49	chr6:75954400-75968000	Weak transcription	NHEK	skin
50	chr6:75954400-75968600	Weak transcription	Fetal Brain Female	brain

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