Variant report

Variant	rs577083442
Chromosome Location	chr2:189184676-189184677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189153673..189157464-chr2:189183823..189187433,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144366	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv431890	chr2:189175905-189202876	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1010330	chr2:189182307-189265614	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv584053	chr2:189184422-189245515	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189169400-189187200	Weak transcription	NHLF	lung
2	chr2:189178400-189191400	Weak transcription	Fetal Lung	lung
3	chr2:189179400-189187600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:189179800-189187400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:189180400-189187400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:189181600-189185000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:189181800-189187400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:189182000-189187000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:189182000-189191400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:189182000-189192200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:189182600-189185800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:189183000-189187200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr2:189183000-189196000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr2:189183200-189185000	Enhancers	A549	lung
15	chr2:189183400-189187000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:189183400-189187000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:189183400-189187000	Weak transcription	Stomach Mucosa	stomach
18	chr2:189183400-189187400	Weak transcription	NH-A	brain
19	chr2:189183400-189197200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr2:189183400-189198400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:189183600-189187000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr2:189183600-189187000	Weak transcription	NHDF-Ad	bronchial
23	chr2:189183600-189205000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr2:189183600-189205400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr2:189183800-189187000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:189183800-189187000	Weak transcription	Osteobl	bone
27	chr2:189183800-189187200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr2:189183800-189187400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr2:189183800-189187400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:189183800-189187400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:189183800-189187400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr2:189183800-189187400	Weak transcription	Aorta	Aorta
33	chr2:189183800-189198600	Weak transcription	Ovary	ovary
34	chr2:189184200-189185000	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr2:189184400-189185000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr2:189184400-189185000	Enhancers	Pancreas	Pancrea
37	chr2:189184400-189185200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr2:189184400-189185400	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr2:189184600-189185000	Enhancers	Gastric	stomach
40	chr2:189184600-189185400	Genic enhancers	HUVEC	blood vessel

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