Variant report

Variant	rs577091167
Chromosome Location	chr2:40527149-40527150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv34071	chr2:40435231-40578229	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv962524	chr2:40523031-40530466	Enhancers Weak transcription Genic enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
5	nsv1010508	chr2:40526981-40590777	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv535655	chr2:40526981-40590777	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40512800-40530000	Weak transcription	NHDF-Ad	bronchial
2	chr2:40515200-40527600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:40515200-40531400	Weak transcription	Osteobl	bone
4	chr2:40515800-40530400	Weak transcription	Right Ventricle	heart
5	chr2:40518200-40540600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:40519800-40527400	Weak transcription	HSMM	muscle
7	chr2:40520400-40530000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr2:40521000-40527600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:40526200-40527600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:40526200-40527600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr2:40526400-40530000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr2:40526400-40531400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr2:40526600-40527800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:40526800-40527800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:40526800-40528000	Enhancers	Fetal Heart	heart
16	chr2:40526800-40528400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:40527000-40527400	Enhancers	HSMMtube	muscle
18	chr2:40527000-40530400	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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