Variant report

Variant	rs577095579
Chromosome Location	chr12:48366486-48366487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:48362502..48365466-chr12:48366201..48368271,2	K562	blood:
2	chr12:48365132..48368005-chr12:48368353..48370036,2	K562	blood:
3	chr12:48360838..48363620-chr12:48364578..48367184,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832401	chr12:48347453-48477999	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv899061	chr12:48360620-48389023	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3441390	chr12:48364560-48366783	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv525456	chr12:48366449-48376969	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv519659	chr12:48366449-48389245	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48358400-48367800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:48358400-48367800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:48358400-48369800	Weak transcription	Brain Angular Gyrus	brain
4	chr12:48358400-48373000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:48358600-48366600	Weak transcription	Fetal Lung	lung
6	chr12:48358600-48369400	Weak transcription	Fetal Kidney	kidney
7	chr12:48358600-48381400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:48359200-48384000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr12:48359600-48366600	Strong transcription	Thymus	Thymus
10	chr12:48360000-48368200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr12:48360200-48369600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr12:48362200-48368000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr12:48362400-48370600	Weak transcription	HMEC	breast
14	chr12:48362400-48370800	Weak transcription	NHEK	skin
15	chr12:48362600-48367200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr12:48362800-48367600	Weak transcription	Small Intestine	intestine
17	chr12:48362800-48368000	Weak transcription	Fetal Brain Female	brain
18	chr12:48363000-48367000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr12:48363000-48367800	Weak transcription	Colon Smooth Muscle	Colon
20	chr12:48363000-48368800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr12:48363000-48370800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr12:48363000-48370800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr12:48363200-48370800	Weak transcription	Fetal Stomach	stomach
24	chr12:48363400-48366600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr12:48363400-48366600	Weak transcription	Pancreas	Pancrea
26	chr12:48363400-48367800	Weak transcription	Dnd41	blood
27	chr12:48363400-48368200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr12:48363400-48368200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr12:48363400-48369000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr12:48363400-48370800	Weak transcription	Fetal Thymus	thymus
31	chr12:48363400-48374800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr12:48363400-48375000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr12:48363400-48375000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr12:48363400-48383000	Weak transcription	Spleen	Spleen
35	chr12:48364000-48370600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr12:48364400-48369800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr12:48364400-48371600	Weak transcription	Fetal Muscle Leg	muscle
38	chr12:48364400-48372600	Strong transcription	Fetal Intestine Small	intestine
39	chr12:48364400-48381200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr12:48364600-48369800	Weak transcription	Placenta	Placenta
41	chr12:48364800-48368200	Weak transcription	Primary T cells from cord blood	blood
42	chr12:48365000-48367800	Weak transcription	Fetal Intestine Large	intestine
43	chr12:48365200-48381600	Weak transcription	Right Atrium	heart
44	chr12:48365400-48381000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr12:48366000-48366600	Enhancers	Gastric	stomach
46	chr12:48366000-48366600	Enhancers	Stomach Mucosa	stomach
47	chr12:48366000-48366800	Enhancers	HepG2	liver
48	chr12:48366000-48370400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr12:48366200-48370600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr12:48366200-48381200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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