Variant report

Variant	rs577098062
Chromosome Location	chr12:124247200-124247201
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:124238409..124242727-chr12:124245328..124248805,4	MCF-7	breast:
2	chr12:124239074..124241226-chr12:124246281..124247802,2	K562	blood:

Variant related genes	Relation type
ENSG00000185344	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3389445	chr12:124245999-124247847	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:160 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124201800-124247800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:124203800-124248000	Strong transcription	Dnd41	blood
3	chr12:124234200-124247400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr12:124239800-124247200	Weak transcription	HSMM	muscle
5	chr12:124239800-124249400	Weak transcription	Brain Substantia Nigra	brain
6	chr12:124239800-124252000	Weak transcription	K562	blood
7	chr12:124244800-124254800	Weak transcription	HSMMtube	muscle
8	chr12:124245800-124247800	Bivalent Enhancer	Fetal Brain Male	brain
9	chr12:124245800-124248000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:124246000-124247200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:124246000-124247400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:124246000-124247600	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr12:124246000-124247600	Active TSS	Rectal Smooth Muscle	rectum
14	chr12:124246200-124247200	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr12:124246200-124247200	Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr12:124246200-124247200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr12:124246200-124247200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr12:124246200-124247400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr12:124246200-124247400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr12:124246200-124247600	Active TSS	Fetal Kidney	kidney
21	chr12:124246200-124247800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
22	chr12:124246200-124247800	Active TSS	H9 Cell Line	embryonic stem cell
23	chr12:124246200-124248200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr12:124246400-124247200	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr12:124246400-124247200	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr12:124246400-124247200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr12:124246400-124247200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr12:124246400-124247200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr12:124246400-124247200	Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr12:124246400-124247200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr12:124246400-124247200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr12:124246400-124247200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr12:124246400-124247200	Active TSS	Aorta	Aorta
34	chr12:124246400-124247200	Flanking Active TSS	Liver	Liver
35	chr12:124246400-124247200	Active TSS	Brain Cingulate Gyrus	brain
36	chr12:124246400-124247200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr12:124246400-124247200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
38	chr12:124246400-124247200	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr12:124246400-124247200	Flanking Active TSS	Gastric	stomach
40	chr12:124246400-124247200	Flanking Active TSS	Right Ventricle	heart
41	chr12:124246400-124247200	Active TSS	HepG2	liver
42	chr12:124246400-124247200	Flanking Active TSS	HMEC	breast
43	chr12:124246400-124247400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr12:124246400-124247400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
45	chr12:124246400-124247400	Active TSS	Primary T cells from cord blood	blood
46	chr12:124246400-124247400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr12:124246400-124247400	Flanking Active TSS	Esophagus	oesophagus
48	chr12:124246400-124247400	Active TSS	Fetal Intestine Small	intestine
49	chr12:124246400-124247400	Flanking Active TSS	Pancreas	Pancrea
50	chr12:124246400-124247400	Flanking Active TSS	Right Atrium	heart

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