Variant report

Variant	rs577111277
Chromosome Location	chr4:85669118-85669119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85657792..85659946-chr4:85668584..85671290,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85604400-85674800	Weak transcription	Small Intestine	intestine
2	chr4:85615000-85677600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:85619200-85726000	Weak transcription	Hela-S3	cervix
4	chr4:85636400-85701200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:85642800-85678000	Weak transcription	Gastric	stomach
6	chr4:85648000-85676200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:85651000-85671400	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr4:85651000-85673000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr4:85651000-85673200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr4:85651000-85676800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:85651000-85678600	Strong transcription	Placenta	Placenta
12	chr4:85652200-85670000	Strong transcription	Liver	Liver
13	chr4:85652200-85678400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:85652200-85678400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:85652200-85679200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:85652400-85679200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:85652600-85671600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:85652600-85678400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:85652600-85678600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:85656800-85672000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:85657000-85704200	Weak transcription	Psoas Muscle	Psoas
22	chr4:85657400-85671400	Strong transcription	HSMM	muscle
23	chr4:85658000-85673800	Strong transcription	Fetal Muscle Trunk	muscle
24	chr4:85658000-85676600	Strong transcription	Fetal Intestine Large	intestine
25	chr4:85659200-85674200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:85659800-85678400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr4:85660400-85669200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr4:85660800-85672200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr4:85661000-85669200	Weak transcription	Fetal Heart	heart
30	chr4:85662600-85670200	Strong transcription	NHDF-Ad	bronchial
31	chr4:85663200-85678400	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr4:85663800-85670000	Weak transcription	Pancreas	Pancrea
33	chr4:85664000-85670000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:85664000-85670000	Weak transcription	Colonic Mucosa	Colon
35	chr4:85664000-85674000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:85664000-85703400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr4:85664000-85703600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr4:85664200-85670200	Weak transcription	NHLF	lung
39	chr4:85664200-85672000	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr4:85664200-85703600	Weak transcription	Right Ventricle	heart
41	chr4:85664600-85670800	Weak transcription	HMEC	breast
42	chr4:85665800-85678400	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr4:85666000-85676600	Strong transcription	Adipose Nuclei	Adipose
44	chr4:85666200-85671200	Strong transcription	Fetal Brain Female	brain
45	chr4:85666200-85672800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr4:85666200-85673200	Strong transcription	NH-A	brain
47	chr4:85666200-85677200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr4:85666600-85676600	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr4:85666800-85671600	Strong transcription	HSMMtube	muscle
50	chr4:85666800-85676400	Strong transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links