Variant report

Variant	rs577147
Chromosome Location	chr7:80797794-80797795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80572153..80572810-chr7:80797740..80798526,2	MCF-7	breast:
2	chr7:80796460..80799738-chr7:80803343..80807008,3	MCF-7	breast:
3	chr7:80788533..80789298-chr7:80797276..80797921,3	MCF-7	breast:
4	chr7:80786119..80788066-chr7:80797479..80799282,2	MCF-7	breast:
5	chr7:80788384..80789329-chr7:80797240..80797887,2	MCF-7	breast:
6	chr7:80548267..80551645-chr7:80792812..80798041,5	MCF-7	breast:
7	chr7:80572230..80572810-chr7:80797271..80798240,3	MCF-7	breast:
8	chr7:80794786..80796336-chr7:80796368..80797899,2	MCF-7	breast:
9	chr7:80788382..80789329-chr7:80797240..80797887,3	MCF-7	breast:
10	chr7:80570519..80573316-chr7:80792715..80798037,5	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13231640	0.82[TSI][hapmap]
rs327664	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs327666	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs327668	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs327678	0.82[TSI][hapmap]
rs327725	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs471729	0.82[TSI][hapmap]
rs478703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs560921	0.82[TSI][hapmap]
rs561061	0.82[TSI][hapmap]
rs571662	0.82[TSI][hapmap]
rs581142	0.85[TSI][hapmap]
rs7797263	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80792600-80799600	Weak transcription	Osteobl	bone
2	chr7:80792600-80803000	Weak transcription	K562	blood
3	chr7:80793400-80798800	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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