Variant report

Variant	rs577149888
Chromosome Location	chr1:102171274-102171275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102169400-102172400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:102169800-102171600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr1:102170000-102171400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr1:102170000-102172200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:102170200-102171400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:102170200-102172200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:102170200-102172200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:102171200-102171600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr1:102171200-102172000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:102171200-102172200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:102171200-102172800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links