Variant report

Variant	rs577177420
Chromosome Location	chr12:117366347-117366348
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:117348721..117350457-chr12:117364988..117367917,3	MCF-7	breast:
2	chr12:117364974..117366703-chr12:117369746..117372327,2	MCF-7	breast:
3	chr12:117359173..117361921-chr12:117365401..117367494,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174989	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832524	chr12:117314110-117496576	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1046811	chr12:117353904-117396230	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a
3	esv1798657	chr12:117354067-117392259	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	n/a
4	nsv1048942	chr12:117365506-117400588	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117349800-117371000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr12:117350200-117366800	Weak transcription	Spleen	Spleen
3	chr12:117350200-117367800	Weak transcription	Brain Germinal Matrix	brain
4	chr12:117350200-117371000	Weak transcription	Right Ventricle	heart
5	chr12:117350600-117370600	Weak transcription	Fetal Brain Male	brain
6	chr12:117354800-117383200	Weak transcription	Esophagus	oesophagus
7	chr12:117357200-117367600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr12:117357800-117367600	Weak transcription	Fetal Heart	heart
9	chr12:117358400-117392600	Weak transcription	Small Intestine	intestine
10	chr12:117358800-117374000	Weak transcription	Colonic Mucosa	Colon
11	chr12:117359200-117367400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:117363000-117367400	Weak transcription	HepG2	liver
13	chr12:117363200-117371200	Weak transcription	Stomach Mucosa	stomach
14	chr12:117363200-117399400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr12:117363400-117366400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr12:117363400-117370000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr12:117363400-117373400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr12:117363400-117375200	Weak transcription	HMEC	breast
19	chr12:117363400-117381000	Weak transcription	NHEK	skin
20	chr12:117363400-117381400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr12:117363400-117385000	Weak transcription	HUVEC	blood vessel
22	chr12:117363600-117375000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr12:117363800-117371000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr12:117363800-117374000	Weak transcription	Thymus	Thymus
25	chr12:117364000-117371800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr12:117364000-117372000	Strong transcription	Primary B cells from cord blood	blood
27	chr12:117364200-117366600	Strong transcription	HSMM	muscle
28	chr12:117364200-117367600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr12:117364200-117367800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr12:117364200-117372600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr12:117364600-117366600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr12:117364800-117367200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr12:117364800-117368000	Strong transcription	Osteobl	bone
34	chr12:117364800-117368200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr12:117364800-117372800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr12:117364800-117374000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr12:117365000-117367200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr12:117365000-117367200	Strong transcription	Left Ventricle	heart
39	chr12:117365000-117367400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr12:117365000-117370800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr12:117365000-117371000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr12:117365000-117371000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr12:117365000-117383200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr12:117365000-117383400	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr12:117365000-117406000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr12:117365200-117366400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr12:117365200-117367800	Strong transcription	Primary B cells from peripheral blood	blood
48	chr12:117365200-117367800	Strong transcription	Fetal Stomach	stomach
49	chr12:117365200-117371000	Weak transcription	Brain Substantia Nigra	brain
50	chr12:117365200-117371200	Weak transcription	Brain Angular Gyrus	brain

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