Variant report

Variant	rs57717915
Chromosome Location	chr15:74676408-74676409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74674450..74677326-chr15:74734711..74737166,2	K562	blood:
2	chr15:74674587..74678748-chr15:74711681..74714409,4	K562	blood:
3	chr15:74674020..74678319-chr15:74686843..74691927,9	MCF-7	breast:
4	chr15:74674464..74676732-chr15:74730523..74731726,34	MCF-7	breast:
5	chr15:74675537..74677180-chr15:74730758..74731693,9	MCF-7	breast:
6	chr15:74675197..74678908-chr15:74679707..74682707,4	K562	blood:
7	chr15:74673950..74692681-chr15:74720825..74732493,46	MCF-7	breast:
8	chr15:74675668..74677716-chr15:74696370..74698662,2	MCF-7	breast:
9	chr15:74667595..74674345-chr15:74676249..74682092,7	K562	blood:
10	chr15:74675641..74677310-chr15:74711681..74714409,2	K562	blood:
11	chr15:74675629..74677365-chr15:75051109..75053785,2	K562	blood:
12	chr15:74671949..74676409-chr15:74729449..74732504,7	MCF-7	breast:
13	chr15:74674873..74676456-chr15:74837336..74838869,2	MCF-7	breast:
14	chr15:74675805..74678192-chr15:74715315..74717229,2	MCF-7	breast:
15	chr15:74674023..74678158-chr15:74678990..74681883,4	MCF-7	breast:
16	chr15:74676164..74677951-chr15:74723828..74725756,2	MCF-7	breast:
17	chr15:74675588..74678002-chr15:74678167..74680672,2	K562	blood:
18	chr15:74674826..74677485-chr15:74730941..74732825,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138623	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56840493	1.00[AMR][1000 genomes]
rs58044340	1.00[AMR][1000 genomes]
rs58660565	1.00[AMR][1000 genomes]
rs60284500	1.00[AMR][1000 genomes]
rs60289450	1.00[AMR][1000 genomes]
rs61744270	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482615	chr15:74593625-74757962	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
3	nsv904351	chr15:74638965-74697084	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv904352	chr15:74638965-74715205	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74667400-74676800	Weak transcription	Colonic Mucosa	Colon
2	chr15:74667400-74691200	Enhancers	Placenta	Placenta
3	chr15:74667600-74677600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:74667600-74677600	Weak transcription	Right Atrium	heart
5	chr15:74670800-74678600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:74671800-74676600	Weak transcription	Lung	lung
7	chr15:74671800-74677600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:74672000-74678600	Weak transcription	Fetal Kidney	kidney
9	chr15:74672600-74685600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr15:74673000-74678800	Enhancers	Osteobl	bone
11	chr15:74673000-74685000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:74673000-74685600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr15:74673600-74679600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:74673600-74679600	Enhancers	Fetal Thymus	thymus
15	chr15:74673800-74676600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr15:74673800-74679000	Enhancers	NH-A	brain
17	chr15:74673800-74680400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:74673800-74681000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:74673800-74681400	Enhancers	HMEC	breast
20	chr15:74674000-74679800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr15:74674000-74682000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:74674400-74683000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:74674600-74677200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:74674600-74677200	Enhancers	Dnd41	blood
25	chr15:74674600-74678000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr15:74674600-74678200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:74674600-74678600	Enhancers	Stomach Mucosa	stomach
28	chr15:74674600-74678800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr15:74674600-74680200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:74674600-74681200	Enhancers	Primary B cells from peripheral blood	blood
31	chr15:74674600-74686200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr15:74674800-74677000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr15:74674800-74679200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr15:74674800-74679600	Enhancers	Thymus	Thymus
35	chr15:74675000-74676600	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:74675000-74677000	Weak transcription	Adipose Nuclei	Adipose
37	chr15:74675000-74677200	Enhancers	Primary B cells from cord blood	blood
38	chr15:74675000-74677400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr15:74675000-74678200	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr15:74675000-74678600	Enhancers	Primary T cells fromperipheralblood	blood
41	chr15:74675000-74681400	Enhancers	Spleen	Spleen
42	chr15:74675200-74676600	Weak transcription	Brain Anterior Caudate	brain
43	chr15:74675200-74676600	Weak transcription	NHDF-Ad	bronchial
44	chr15:74675200-74677600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr15:74675200-74677600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr15:74675200-74677600	Weak transcription	Fetal Intestine Large	intestine
47	chr15:74675200-74678200	Flanking Active TSS	GM12878-XiMat	blood
48	chr15:74675200-74678400	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr15:74675200-74678400	Weak transcription	Brain Substantia Nigra	brain
50	chr15:74675200-74678600	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links