Variant report

Variant	rs577203992
Chromosome Location	chr17:16935597-16935598
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16905205..16905735-chr17:16935481..16936004,2	MCF-7	breast:
2	chr17:16931293..16933179-chr17:16934223..16937186,2	MCF-7	breast:
3	chr17:16931573..16934044-chr17:16934220..16938314,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv907727	chr17:16892265-16938582	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv543231	chr17:16926227-16950644	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv978376	chr17:16934418-16938973	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16930200-16936200	Enhancers	Fetal Muscle Leg	muscle
2	chr17:16930400-16936600	Enhancers	Fetal Muscle Trunk	muscle
3	chr17:16930600-16936000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr17:16930600-16936200	Enhancers	HMEC	breast
5	chr17:16930600-16937600	Enhancers	HSMMtube	muscle
6	chr17:16930800-16935800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr17:16930800-16936000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr17:16931000-16936000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr17:16931400-16936000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr17:16931600-16936400	Enhancers	Fetal Lung	lung
11	chr17:16932200-16939800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr17:16932400-16940600	Enhancers	HSMM	muscle
13	chr17:16932600-16936000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr17:16932800-16944200	Weak transcription	Fetal Brain Female	brain
15	chr17:16933000-16935600	Weak transcription	Esophagus	oesophagus
16	chr17:16933200-16936400	Enhancers	Brain Hippocampus Middle	brain
17	chr17:16933200-16936600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr17:16933200-16936800	Weak transcription	Fetal Thymus	thymus
19	chr17:16933400-16936200	Enhancers	Brain Cingulate Gyrus	brain
20	chr17:16933400-16936200	Enhancers	HUVEC	blood vessel
21	chr17:16933600-16935600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr17:16933600-16935800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr17:16933600-16936000	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr17:16933600-16936000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr17:16933600-16936200	Enhancers	Hela-S3	cervix
26	chr17:16933600-16936200	Enhancers	NH-A	brain
27	chr17:16933800-16936000	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr17:16933800-16936200	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr17:16933800-16936200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr17:16933800-16936200	Enhancers	Fetal Heart	heart
31	chr17:16933800-16936800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr17:16934000-16936000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr17:16934000-16936400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr17:16934200-16935600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr17:16934200-16936000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr17:16934200-16936000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr17:16934200-16936000	Enhancers	Left Ventricle	heart
38	chr17:16934200-16936000	Enhancers	Lung	lung
39	chr17:16934200-16936000	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr17:16934200-16936200	Enhancers	Fetal Stomach	stomach
41	chr17:16934200-16936400	Enhancers	Osteobl	bone
42	chr17:16934200-16937800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr17:16934400-16935800	Enhancers	Aorta	Aorta
44	chr17:16934400-16936000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr17:16934400-16936000	Enhancers	Pancreas	Pancrea
46	chr17:16934400-16936400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr17:16934400-16937400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr17:16934600-16935800	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr17:16934600-16936200	Enhancers	NHDF-Ad	bronchial
50	chr17:16934600-16936800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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