Variant report

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13122872	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34114839	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62327806	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119868800-119886000	Weak transcription	Fetal Stomach	stomach
2	chr4:119874200-119886000	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:119875200-119885800	Weak transcription	NHLF	lung
4	chr4:119875800-119880800	Weak transcription	Brain Anterior Caudate	brain
5	chr4:119876400-119886000	Weak transcription	Aorta	Aorta
6	chr4:119876800-119882800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:119878400-119881200	Enhancers	Colon Smooth Muscle	Colon
8	chr4:119878400-119881800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:119878600-119885400	Weak transcription	Right Ventricle	heart
10	chr4:119879200-119883400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:119879200-119889000	Weak transcription	Fetal Heart	heart
12	chr4:119879400-119880200	Enhancers	Stomach Smooth Muscle	stomach
13	chr4:119879400-119883400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:119879400-119884000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:119879800-119883800	Weak transcription	Right Atrium	heart
16	chr4:119879800-119886000	Weak transcription	Psoas Muscle	Psoas
17	chr4:119879800-119893400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:119880000-119882400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr4:119880000-119883200	Weak transcription	Ovary	ovary
20	chr4:119880000-119884000	Weak transcription	Left Ventricle	heart

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