Variant report

Variant	rs57721900
Chromosome Location	chr8:130654852-130654853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55662234	1.00[AMR][1000 genomes]
rs58424344	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58451060	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60229064	1.00[AMR][1000 genomes]
rs60925348	1.00[AMR][1000 genomes]
rs73401567	1.00[AMR][1000 genomes]
rs73712930	1.00[AMR][1000 genomes]
rs73712933	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130651000-130655400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:130652600-130656000	Weak transcription	Fetal Lung	lung
3	chr8:130654400-130655200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr8:130654400-130656400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:130654600-130655800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:130654800-130655200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:130654800-130655200	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:130654800-130656400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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