Variant report

Variant	rs577220861
Chromosome Location	chr5:68724078-68724079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881767	chr5:68625786-68733698	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1018410	chr5:68692244-68822384	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv3437180	chr5:68721996-68726394	Weak transcription Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2435100	chr5:68723127-68724813	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3444533	chr5:68723221-68725769	Weak transcription Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3336459	chr5:68723296-68725494	Weak transcription Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv9527	chr5:68723835-68724722	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2030621	chr5:68723858-68724683	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3469323	chr5:68723919-68724544	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
10	esv3524342	chr5:68723939-68724636	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3524340	chr5:68723949-68724589	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
12	esv3524339	chr5:68723962-68724521	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
13	esv3469326	chr5:68723968-68724559	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
14	esv3469325	chr5:68723974-68724515	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
15	esv3469324	chr5:68723974-68724581	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
16	esv3524338	chr5:68723985-68724545	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
17	esv3524337	chr5:68723993-68724547	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
18	esv3469322	chr5:68724029-68724499	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
19	esv3524336	chr5:68724039-68724501	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
20	esv3469327	chr5:68724043-68724499	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
21	esv3524343	chr5:68724047-68724504	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68711800-68725000	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:68711800-68731000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:68712400-68731000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:68712400-68735600	Weak transcription	Hela-S3	cervix
5	chr5:68712400-68739000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:68712400-68740400	Weak transcription	Fetal Kidney	kidney
7	chr5:68712800-68738200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:68716000-68728800	Weak transcription	Lung	lung
9	chr5:68716000-68732200	Weak transcription	Esophagus	oesophagus
10	chr5:68716000-68733600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr5:68716000-68735800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:68716000-68738200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:68716000-68738800	Weak transcription	Fetal Stomach	stomach
14	chr5:68716200-68724800	Weak transcription	Stomach Mucosa	stomach
15	chr5:68716200-68728200	Weak transcription	Liver	Liver
16	chr5:68716200-68728400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:68716200-68728400	Weak transcription	Placenta	Placenta
18	chr5:68716200-68738000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr5:68716400-68728200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:68716400-68728400	Weak transcription	HMEC	breast
21	chr5:68716400-68729000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:68716400-68729800	Weak transcription	NHEK	skin
23	chr5:68716400-68742000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr5:68716600-68728400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr5:68716600-68729800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr5:68716800-68727400	Weak transcription	HepG2	liver
27	chr5:68716800-68728400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr5:68717400-68728200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr5:68719000-68728400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr5:68719200-68724600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr5:68719200-68727400	Weak transcription	Pancreas	Pancrea
32	chr5:68719200-68728400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:68719200-68728400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr5:68719200-68733000	Strong transcription	Fetal Intestine Small	intestine
35	chr5:68719400-68729800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr5:68719400-68731800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr5:68719400-68733600	Weak transcription	Gastric	stomach
38	chr5:68720400-68727400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr5:68720800-68724400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr5:68720800-68724600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr5:68720800-68728200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr5:68720800-68728400	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr5:68723600-68727600	Weak transcription	Fetal Intestine Large	intestine
44	chr5:68723800-68724600	Weak transcription	GM12878-XiMat	blood
45	chr5:68723800-68727400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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