Variant report

Variant	rs57724657
Chromosome Location	chr14:106066701-106066702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:106063292-106070062	GM12892	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:106066668-106066718	Jurkat	blood:	n/a
2	chr14:106066668-106066718	GM12892	blood:	n/a
3	chr14:106066668-106066718	GM12891	blood:	n/a
4	chr14:106066668-106066718	HCF	heart:	n/a
5	chr14:106066668-106066718	BJ	skin:	n/a
6	chr14:106066668-106066718	HepG2	liver:	n/a
7	chr14:106066668-106066718	HIPEpiC	eye:	n/a
8	chr14:106066668-106066718	HRCEpiC	kidney:	n/a
9	chr14:106066668-106066718	HEK293	kidney:	embryo
10	chr14:106066668-106066718	PrEC	prostate:	n/a
11	chr14:106066668-106066718	HCM	heart:	n/a
12	chr14:106066668-106066718	HL-60	blood:	n/a
13	chr14:106066668-106066718	Hepatocyte	liver:	n/a
14	chr14:106066668-106066718	HRE	kidney:	n/a
15	chr14:106066668-106066718	T-47D	breast:	n/a
16	chr14:106066668-106066718	AG09309	skin:	n/a
17	chr14:106066668-106066718	CMK	blood:	n/a
18	chr14:106066668-106066718	GM06990	blood:	n/a
19	chr14:106066668-106066718	NH-A	brain:	n/a
20	chr14:106066668-106066718	BE2_C	brain:	n/a
21	chr14:106066668-106066718	HNPCEpiC	eye:	n/a
22	chr14:106066668-106066718	AG09319	gingival:	n/a
23	chr14:106066668-106066718	ProgFib	skin:	n/a
24	chr14:106066668-106066718	NHDF-neo	bronchial:	n/a
25	chr14:106066668-106066718	HMEC	breast:	n/a
26	chr14:106066668-106066718	HUVEC	blood vessel:	n/a
27	chr14:106066668-106066718	NT2-D1	testis:	n/a
28	chr14:106066668-106066718	SKMC	muscle:	n/a
29	chr14:106066668-106066718	HAEpiC	amniotic membrane:	n/a
30	chr14:106066668-106066718	ECC-1	luminal epithelium:	n/a
31	chr14:106066668-106066718	IMR90	lung:	fetal
32	chr14:106066668-106066718	U87	brain:	n/a
33	chr14:106066668-106066718	H1-hESC	embryonic stem cell:	embryo
34	chr14:106066668-106066718	A549	lung:	n/a
35	chr14:106066668-106066718	HPAEpiC	pulmonary alveolar:	n/a
36	chr14:106066668-106066718	AG04450	lung:	fetal
37	chr14:106066668-106066718	Hela-S3	cervix:	n/a
38	chr14:106066668-106066718	AoSMC	blood vessel:	n/a
39	chr14:106066668-106066718	GM12878	blood:	n/a
40	chr14:106066668-106066718	AG04449	skin:	fetal
41	chr14:106066668-106066718	AG10803	skin:	n/a
42	chr14:106066668-106066718	NHBE	bronchial:	n/a
43	chr14:106066668-106066718	SK-N-MC	brain:	n/a
44	chr14:106066668-106066718	HCPEpiC	choroid plexus:	n/a
45	chr14:106066668-106066718	MCF-7	breast:	n/a
46	chr14:106066668-106066718	HCT-116	colon:	n/a
47	chr14:106066668-106066718	RPTEC	kidney:	n/a
48	chr14:106066668-106066718	PFSK-1	brain:	n/a
49	chr14:106066668-106066718	SAEC	small airway:	n/a
50	chr14:106066668-106066718	GM19239	blood:	n/a

No data

Variant related genes	Relation type
IGHE	TF binding region
ENSG00000227468	TF binding region
ENSG00000227468	CpG island
IGHE	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs60816656	1.00[AMR][1000 genomes]
rs61675149	0.83[AFR][1000 genomes]
rs61737470	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61737471	1.00[AMR][1000 genomes]
rs74091265	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106058400-106067800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr14:106065400-106070200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:106066200-106070400	Enhancers	Placenta	Placenta

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