Variant report

Variant	rs577272471
Chromosome Location	chr3:110922755-110922756
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877339	chr3:110889974-111070554	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv3945	chr3:110922029-110967244	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110835600-110929600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:110869400-110929000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:110881000-110928000	Weak transcription	Osteobl	bone
4	chr3:110894000-110922800	Weak transcription	Gastric	stomach
5	chr3:110894000-110924000	Weak transcription	Fetal Stomach	stomach
6	chr3:110894000-110934400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:110894200-110924800	Weak transcription	Fetal Intestine Small	intestine
8	chr3:110894200-110925600	Weak transcription	NHLF	lung
9	chr3:110894200-110929600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:110899200-110935200	Weak transcription	Lung	lung
11	chr3:110903400-110929200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:110910200-110927200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:110912000-110923800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:110913400-110924200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr3:110913400-110932000	Weak transcription	Fetal Heart	heart
16	chr3:110914200-110924000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:110914200-110925800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:110914400-110924200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:110914400-110924200	Weak transcription	Left Ventricle	heart
20	chr3:110914400-110928400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:110915000-110924000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr3:110915000-110934200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:110915400-110928000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:110915600-110929800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:110916000-110928200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:110916200-110925600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr3:110916400-110924400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:110916600-110923800	Weak transcription	Dnd41	blood
29	chr3:110916800-110923800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr3:110917000-110923400	Weak transcription	Liver	Liver
31	chr3:110917000-110933400	Weak transcription	Placenta	Placenta
32	chr3:110917200-110924200	Weak transcription	Fetal Lung	lung
33	chr3:110917200-110929000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:110917400-110923400	Weak transcription	Adipose Nuclei	Adipose
35	chr3:110917600-110928000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:110918400-110925000	Weak transcription	Pancreas	Pancrea
37	chr3:110919000-110923800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr3:110919400-110924000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:110919400-110928800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr3:110919400-110928800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr3:110919400-110929000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr3:110919400-110929000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr3:110919400-110929600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:110919600-110923600	Weak transcription	Colon Smooth Muscle	Colon
45	chr3:110919600-110928800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr3:110920000-110945800	Weak transcription	HSMMtube	muscle
47	chr3:110920400-110922800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr3:110921000-110922800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:110921800-110922800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:110922000-110922800	Strong transcription	Muscle Satellite Cultured Cells	--

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