Variant report

Variant	rs577274101
Chromosome Location	chr5:118845530-118845531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1016271	chr5:118836891-119487982	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv964931	chr5:118844538-118845809	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118791800-118846600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:118794800-118861200	Weak transcription	HSMM	muscle
3	chr5:118804200-118879600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr5:118806000-118846400	Weak transcription	Esophagus	oesophagus
5	chr5:118806000-118846400	Weak transcription	Spleen	Spleen
6	chr5:118806200-118846400	Weak transcription	Pancreas	Pancrea
7	chr5:118806200-118855600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:118806400-118846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:118812000-118846400	Weak transcription	NHLF	lung
10	chr5:118816000-118847000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr5:118817000-118846400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr5:118820200-118846400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr5:118827600-118847800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:118832400-118878200	Weak transcription	NH-A	brain
15	chr5:118832600-118868600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr5:118833000-118860200	Weak transcription	Stomach Mucosa	stomach
17	chr5:118833200-118846000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr5:118834400-118847800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:118834800-118846400	Weak transcription	Small Intestine	intestine
20	chr5:118836000-118850600	Weak transcription	HUVEC	blood vessel
21	chr5:118836600-118846400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:118837600-118846200	Weak transcription	HepG2	liver
23	chr5:118838000-118869200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr5:118840000-118846000	Weak transcription	Fetal Thymus	thymus
25	chr5:118840000-118846600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr5:118840200-118878400	Weak transcription	Psoas Muscle	Psoas
27	chr5:118840400-118846400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr5:118840600-118846200	Weak transcription	K562	blood
29	chr5:118840800-118846200	Weak transcription	Colonic Mucosa	Colon
30	chr5:118841000-118849800	Weak transcription	Osteobl	bone
31	chr5:118841000-118856600	Strong transcription	Liver	Liver
32	chr5:118841000-118880000	Weak transcription	Brain Germinal Matrix	brain
33	chr5:118841200-118846400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr5:118841200-118880000	Weak transcription	A549	lung
35	chr5:118841400-118849000	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr5:118841400-118873200	Weak transcription	Fetal Brain Male	brain
37	chr5:118841600-118846400	Weak transcription	HSMMtube	muscle
38	chr5:118841600-118846600	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr5:118841600-118849000	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr5:118841800-118846400	Weak transcription	GM12878-XiMat	blood
41	chr5:118842000-118846400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr5:118842000-118846400	Weak transcription	Fetal Intestine Small	intestine
43	chr5:118842000-118847800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:118842200-118847400	Strong transcription	Primary B cells from peripheral blood	blood
45	chr5:118842200-118860200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr5:118842400-118846400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr5:118842400-118853000	Strong transcription	Adipose Nuclei	Adipose
48	chr5:118842600-118847600	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr5:118842600-118848600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr5:118843000-118846400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links