Variant report

Variant	rs577276954
Chromosome Location	chr5:54041627-54041628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:53812268..53814960-chr5:54041334..54044388,3	MCF-7	breast:
2	chr5:54037843..54041857-chr5:54043536..54048349,6	K562	blood:
3	chr5:54040322..54042008-chr5:54061113..54064039,2	K562	blood:
4	chr5:54039960..54041992-chr5:54042143..54044677,2	K562	blood:

Variant related genes	Relation type
ENSG00000178996	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3378305	chr5:54040695-54045193	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54036400-54042000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr5:54036800-54041800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr5:54036800-54044800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:54037200-54042800	Weak transcription	Gastric	stomach
5	chr5:54037600-54042000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:54038200-54041800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:54038200-54041800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr5:54038200-54041800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:54038200-54041800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr5:54038200-54041800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:54038200-54041800	Enhancers	Fetal Heart	heart
12	chr5:54038200-54042000	Enhancers	Primary T cells fromperipheralblood	blood
13	chr5:54038200-54042600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:54038400-54041800	Enhancers	Fetal Lung	lung
15	chr5:54038400-54042800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr5:54038600-54041800	Enhancers	Duodenum Mucosa	Duodenum
17	chr5:54039000-54042000	Enhancers	Dnd41	blood
18	chr5:54039400-54041800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr5:54039600-54041800	Enhancers	Fetal Thymus	thymus
20	chr5:54039600-54042000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr5:54039600-54042600	Enhancers	Spleen	Spleen
22	chr5:54039800-54041800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:54040000-54042000	Enhancers	NHDF-Ad	bronchial
24	chr5:54040000-54043000	Weak transcription	Right Ventricle	heart
25	chr5:54040200-54044600	Weak transcription	Esophagus	oesophagus
26	chr5:54040600-54041800	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr5:54040600-54041800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr5:54040600-54042000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr5:54040600-54044000	Enhancers	K562	blood
30	chr5:54040600-54044200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr5:54040600-54044600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr5:54040600-54047400	Weak transcription	Right Atrium	heart
33	chr5:54040600-54050000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr5:54040600-54052400	Weak transcription	Brain Hippocampus Middle	brain
35	chr5:54041200-54041800	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr5:54041200-54041800	Enhancers	Fetal Stomach	stomach
37	chr5:54041200-54042200	Enhancers	Ovary	ovary
38	chr5:54041200-54042200	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr5:54041200-54051800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr5:54041400-54041800	Enhancers	HepG2	liver
41	chr5:54041400-54042000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:54041400-54042000	Enhancers	Lung	lung
43	chr5:54041400-54042000	Enhancers	Pancreas	Pancrea
44	chr5:54041400-54046800	Weak transcription	Primary B cells from cord blood	blood
45	chr5:54041400-54048600	Weak transcription	HSMMtube	muscle
46	chr5:54041600-54041800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr5:54041600-54041800	Enhancers	Placenta	Placenta
48	chr5:54041600-54041800	Enhancers	Left Ventricle	heart
49	chr5:54041600-54041800	Enhancers	Small Intestine	intestine
50	chr5:54041600-54048800	Weak transcription	NHLF	lung

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