Variant report

Variant	rs577287426
Chromosome Location	chr11:36617046-36617047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36611242..36613521-chr11:36616651..36619477,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1850719	chr11:36616867-36657272	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36614200-36617200	Transcr. at gene 5' and 3'	Thymus	Thymus
2	chr11:36614200-36619600	Transcr. at gene 5' and 3'	Dnd41	blood
3	chr11:36615800-36617200	Active TSS	H1 Cell Line	embryonic stem cell
4	chr11:36615800-36617200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:36616000-36617200	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr11:36616000-36617200	Active TSS	Brain Germinal Matrix	brain
7	chr11:36616000-36617200	Active TSS	Psoas Muscle	Psoas
8	chr11:36616000-36617200	Active TSS	Right Atrium	heart
9	chr11:36616000-36617200	Active TSS	HSMMtube	muscle
10	chr11:36616000-36617200	Active TSS	NHLF	lung
11	chr11:36616200-36617200	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr11:36616400-36617200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:36616400-36617200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:36616400-36617200	Flanking Active TSS	Liver	Liver
15	chr11:36616400-36617200	Flanking Active TSS	Fetal Brain Female	brain
16	chr11:36616600-36617200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr11:36616600-36617200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:36616600-36617200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:36616600-36617200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:36616600-36617200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:36616600-36617200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:36616600-36617200	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr11:36616600-36617200	Flanking Active TSS	Brain Cingulate Gyrus	brain
24	chr11:36616600-36617200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr11:36616600-36617200	Flanking Active TSS	Fetal Kidney	kidney
26	chr11:36616600-36617200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr11:36616600-36617200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr11:36616600-36617200	Flanking Active TSS	Stomach Smooth Muscle	stomach
29	chr11:36616600-36621800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:36616600-36640400	Weak transcription	Esophagus	oesophagus
31	chr11:36616600-36657000	Weak transcription	Left Ventricle	heart
32	chr11:36616800-36617200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:36616800-36617200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:36616800-36617200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:36616800-36617200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:36616800-36617200	Enhancers	Brain Angular Gyrus	brain
37	chr11:36616800-36617200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:36616800-36617200	Flanking Active TSS	Brain Substantia Nigra	brain
39	chr11:36616800-36617200	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr11:36616800-36617200	Enhancers	Fetal Intestine Large	intestine
41	chr11:36616800-36617200	Flanking Active TSS	Fetal Lung	lung
42	chr11:36616800-36617200	Enhancers	Rectal Smooth Muscle	rectum
43	chr11:36616800-36617200	Enhancers	Small Intestine	intestine
44	chr11:36616800-36617200	Enhancers	HSMM	muscle
45	chr11:36616800-36617200	Flanking Active TSS	HUVEC	blood vessel
46	chr11:36616800-36617200	Enhancers	NHEK	skin
47	chr11:36616800-36617400	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr11:36616800-36617400	Enhancers	Fetal Intestine Small	intestine
49	chr11:36616800-36621800	Active TSS	Fetal Thymus	thymus
50	chr11:36616800-36639600	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links