Variant report

Variant	rs57729386
Chromosome Location	chr4:127838785-127838786
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55673139	1.00[AMR][1000 genomes]
rs58989193	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59192933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59431933	1.00[AMR][1000 genomes]
rs61227647	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127837600-127838800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:127838200-127838800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:127838200-127838800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:127838200-127838800	Enhancers	Fetal Brain Female	brain
5	chr4:127838400-127838800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:127838400-127838800	Enhancers	Fetal Lung	lung
7	chr4:127838400-127839000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:127838400-127839000	Enhancers	Osteobl	bone
9	chr4:127838400-127839400	Enhancers	K562	blood
10	chr4:127838400-127839400	Enhancers	NHDF-Ad	bronchial
11	chr4:127838400-127860400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:127838600-127838800	Flanking Active TSS	Fetal Brain Male	brain
13	chr4:127838600-127839000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:127838600-127839200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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