Variant report

Variant	rs577310672
Chromosome Location	chr9:6974236-6974237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:6972707..6974430-chr9:6976948..6979606,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870402	chr9:6565246-7016784	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv1033539	chr9:6566610-7022554	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv466111	chr9:6567841-7017391	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv613208	chr9:6567841-7017391	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv1024831	chr9:6573752-7018641	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
6	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
7	nsv892181	chr9:6680477-7070962	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
8	nsv613252	chr9:6715730-7022554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv1023461	chr9:6774993-7022554	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv831500	chr9:6847952-6992535	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv831501	chr9:6868099-7058526	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv892184	chr9:6906384-6985602	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv892185	chr9:6929053-7070962	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1021234	chr9:6933222-7015397	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv870178	chr9:6941584-7060029	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv892186	chr9:6942605-7075305	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv1018732	chr9:6951700-6979382	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv892187	chr9:6974101-7035727	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6890000-6987200	Weak transcription	Aorta	Aorta
2	chr9:6893800-6981600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr9:6912400-6978400	Weak transcription	Esophagus	oesophagus
4	chr9:6922600-6981000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:6932800-6985000	Weak transcription	Spleen	Spleen
6	chr9:6939400-6978600	Weak transcription	Lung	lung
7	chr9:6945000-6981000	Weak transcription	Liver	Liver
8	chr9:6945200-6982600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:6953000-6982600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:6954200-6994800	Weak transcription	Gastric	stomach
11	chr9:6955400-6982400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr9:6955400-6982600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:6955400-6984200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr9:6955600-6984200	Weak transcription	Small Intestine	intestine
15	chr9:6956000-6996000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:6958000-6982200	Weak transcription	Ovary	ovary
17	chr9:6958000-6984000	Weak transcription	Pancreas	Pancrea
18	chr9:6958000-6984200	Weak transcription	Brain Substantia Nigra	brain
19	chr9:6959200-6980800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr9:6959800-6982400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr9:6960200-6980800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr9:6960200-6987000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr9:6960600-6980800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr9:6960600-6984800	Weak transcription	Fetal Intestine Small	intestine
25	chr9:6961000-6978800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:6961000-6979600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr9:6961000-6979600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr9:6961000-6980200	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr9:6961000-6981200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:6961000-6981600	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr9:6961000-6982600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr9:6961000-6982600	Weak transcription	Thymus	Thymus
33	chr9:6961200-6977600	Weak transcription	Primary T cells from cord blood	blood
34	chr9:6961200-6978400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:6961200-6980800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr9:6961200-6981000	Weak transcription	Fetal Thymus	thymus
37	chr9:6961200-6982600	Weak transcription	Adipose Nuclei	Adipose
38	chr9:6961400-6980800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr9:6961400-6982200	Weak transcription	K562	blood
40	chr9:6961400-6984000	Weak transcription	Left Ventricle	heart
41	chr9:6961400-6984200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr9:6962000-6977000	Weak transcription	Primary B cells from cord blood	blood
43	chr9:6962200-6980800	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr9:6962600-6981000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr9:6968400-6980800	Weak transcription	HSMM	muscle
46	chr9:6968400-6982600	Weak transcription	Fetal Intestine Large	intestine
47	chr9:6968400-6986600	Weak transcription	Osteobl	bone
48	chr9:6968600-6982400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr9:6969000-6981000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:6969600-6974400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links