Variant report

Variant	rs577317568
Chromosome Location	chr10:50014672-50014673
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50012510..50015290-chr10:50020965..50023375,3	MCF-7	breast:
2	chr10:50013766..50016503-chr10:50352628..50354357,2	MCF-7	breast:
3	chr10:50011032..50014812-chr10:50025927..50027937,3	K562	blood:
4	chr10:50011096..50015039-chr10:50015649..50020097,7	MCF-7	breast:
5	chr10:50010501..50012813-chr10:50013892..50016790,2	K562	blood:
6	chr10:50012503..50014685-chr10:50027009..50029930,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv516774	chr10:50014328-50014816	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50005200-50026800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:50007200-50017200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:50008200-50015000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:50009200-50015200	Genic enhancers	Primary B cells from cord blood	blood
5	chr10:50009600-50014800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr10:50009600-50028000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:50010800-50014800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr10:50010800-50016000	Enhancers	Fetal Thymus	thymus
9	chr10:50011200-50014800	Enhancers	Brain Germinal Matrix	brain
10	chr10:50011200-50015400	Enhancers	Fetal Muscle Leg	muscle
11	chr10:50011200-50016600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
12	chr10:50011400-50016200	Genic enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:50011600-50016200	Genic enhancers	Monocytes-CD14+_RO01746	blood
14	chr10:50011600-50017000	Enhancers	Fetal Stomach	stomach
15	chr10:50012000-50014800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:50012000-50014800	Enhancers	Fetal Lung	lung
17	chr10:50012600-50015000	Enhancers	Fetal Muscle Trunk	muscle
18	chr10:50012800-50014800	Enhancers	Brain Angular Gyrus	brain
19	chr10:50012800-50016600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:50012800-50016800	Enhancers	NHEK	skin
21	chr10:50013000-50014800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
22	chr10:50013000-50014800	Enhancers	Lung	lung
23	chr10:50013000-50014800	Genic enhancers	Spleen	Spleen
24	chr10:50013000-50015000	Enhancers	Brain Anterior Caudate	brain
25	chr10:50013000-50016600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:50013200-50023800	Strong transcription	GM12878-XiMat	blood
27	chr10:50013400-50014800	Enhancers	H1 Cell Line	embryonic stem cell
28	chr10:50013400-50014800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:50013400-50014800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:50013400-50014800	Enhancers	Dnd41	blood
31	chr10:50013600-50014800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:50013600-50028200	Strong transcription	Primary B cells from peripheral blood	blood
33	chr10:50013600-50061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:50014000-50014800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr10:50014000-50014800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:50014200-50014800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
37	chr10:50014200-50016600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr10:50014200-50017200	Weak transcription	Pancreas	Pancrea
39	chr10:50014200-50017400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:50014200-50030000	Weak transcription	Right Atrium	heart
41	chr10:50014400-50016000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:50014600-50014800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr10:50014600-50014800	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr10:50014600-50014800	Enhancers	Adipose Nuclei	Adipose
45	chr10:50014600-50014800	Enhancers	Brain Cingulate Gyrus	brain
46	chr10:50014600-50014800	Enhancers	Thymus	Thymus
47	chr10:50014600-50014800	Enhancers	NHLF	lung
48	chr10:50014600-50015800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:50014600-50016800	Enhancers	Primary T cells from cord blood	blood
50	chr10:50014600-50017000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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