Variant report

Variant	rs577336631
Chromosome Location	chr7:25355205-25355206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028018	chr7:25351950-25371700	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv464409	chr7:25352809-25371700	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
5	nsv464410	chr7:25354077-25371700	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
6	nsv606427	chr7:25354077-25371700	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25344600-25357200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:25351000-25358400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:25351400-25357200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:25351600-25358200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:25352600-25355600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr7:25352600-25356200	Enhancers	Fetal Intestine Large	intestine
7	chr7:25352600-25357200	Enhancers	Fetal Intestine Small	intestine
8	chr7:25353000-25355600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr7:25353600-25355600	Enhancers	Stomach Mucosa	stomach
10	chr7:25353800-25358400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr7:25354000-25355600	Enhancers	Fetal Kidney	kidney
12	chr7:25354000-25360000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:25354400-25357800	Weak transcription	Brain Anterior Caudate	brain
14	chr7:25354600-25356000	Weak transcription	Pancreas	Pancrea
15	chr7:25354600-25356400	Enhancers	Fetal Lung	lung
16	chr7:25355000-25355400	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr7:25355000-25355600	Enhancers	Small Intestine	intestine
18	chr7:25355000-25356400	Enhancers	Fetal Brain Male	brain
19	chr7:25355000-25360000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:25355200-25355400	Enhancers	Gastric	stomach
21	chr7:25355200-25356200	Enhancers	Duodenum Mucosa	Duodenum
22	chr7:25355200-25358200	Weak transcription	Ovary	ovary
23	chr7:25355200-25358600	Weak transcription	Liver	Liver

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