Variant report

Variant	rs57734936
Chromosome Location	chr10:25308874-25308875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25010539..25015061-chr10:25304353..25309032,5	K562	blood:
2	chr10:25304800..25307101-chr10:25308254..25310100,3	K562	blood:
3	chr10:25304238..25308721-chr10:25308828..25316334,14	MCF-7	breast:
4	chr10:25308766..25310925-chr10:25358161..25359867,2	K562	blood:
5	chr10:25302483..25304169-chr10:25307134..25309696,2	MCF-7	breast:
6	chr10:25307575..25310244-chr10:25349571..25352250,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107863	Chromatin interaction
ENSG00000185875	Chromatin interaction
ENSG00000151023	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59288814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7075332	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7094735	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418576	chr10:25295995-25311122	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25306400-25312400	Weak transcription	Ovary	ovary
2	chr10:25306600-25309400	Weak transcription	Pancreas	Pancrea
3	chr10:25306600-25312000	Weak transcription	Adipose Nuclei	Adipose
4	chr10:25306600-25314000	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:25306600-25315400	Weak transcription	NHDF-Ad	bronchial
6	chr10:25306600-25316400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:25307000-25311000	Weak transcription	HUVEC	blood vessel
8	chr10:25307000-25313200	Weak transcription	Osteobl	bone
9	chr10:25307000-25314400	Weak transcription	Fetal Kidney	kidney
10	chr10:25307000-25316400	Weak transcription	Brain Germinal Matrix	brain
11	chr10:25307000-25316800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr10:25307000-25317000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:25307000-25317000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:25307000-25325400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:25307200-25314800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:25307400-25309400	Weak transcription	Fetal Intestine Small	intestine
17	chr10:25307400-25312200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:25307400-25312400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:25307400-25312600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:25307400-25312800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:25307400-25313000	Weak transcription	Brain Anterior Caudate	brain
22	chr10:25307400-25314200	Weak transcription	Liver	Liver
23	chr10:25307400-25314400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:25307400-25314400	Weak transcription	Fetal Intestine Large	intestine
25	chr10:25307400-25315800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr10:25307400-25316200	Weak transcription	Fetal Lung	lung
27	chr10:25307600-25311200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr10:25307600-25312000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:25307600-25312200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:25307600-25312600	Weak transcription	Primary T cells from cord blood	blood
31	chr10:25307600-25312600	Weak transcription	Brain Substantia Nigra	brain
32	chr10:25307600-25313000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:25307600-25314000	Weak transcription	Dnd41	blood
34	chr10:25307600-25316400	Weak transcription	Primary B cells from cord blood	blood
35	chr10:25308000-25314600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr10:25308800-25309800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:25308800-25314600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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