Variant report

Variant	rs57735062
Chromosome Location	chr19:38641011-38641012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38634157..38637003-chr19:38638873..38642073,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10403595	0.85[AFR][1000 genomes]
rs10413138	0.81[AFR][1000 genomes]
rs10413596	0.81[AFR][1000 genomes]
rs10414916	0.85[AFR][1000 genomes]
rs10414927	0.81[AFR][1000 genomes]
rs10423429	0.85[AFR][1000 genomes]
rs10424818	0.81[AFR][1000 genomes]
rs10425571	0.81[AFR][1000 genomes]
rs28627637	0.81[AFR][1000 genomes]
rs28637743	0.81[AFR][1000 genomes]
rs28649033	0.81[AFR][1000 genomes]
rs56134404	0.81[AFR][1000 genomes]
rs58260561	0.81[AFR][1000 genomes]
rs59099128	1.00[EUR][1000 genomes]
rs59257801	1.00[EUR][1000 genomes]
rs59571293	0.81[AFR][1000 genomes]
rs59655650	1.00[EUR][1000 genomes]
rs61576753	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71354969	0.81[AFR][1000 genomes]
rs73632925	0.81[AFR][1000 genomes]
rs73632930	0.81[AFR][1000 genomes]
rs73636738	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73930389	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv833821	chr19:38629937-38756792	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38591800-38642800	Weak transcription	Small Intestine	intestine
2	chr19:38600600-38652800	Weak transcription	NHDF-Ad	bronchial
3	chr19:38610800-38643600	Weak transcription	HepG2	liver
4	chr19:38611000-38652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:38611600-38641400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr19:38611600-38653000	Weak transcription	HUVEC	blood vessel
7	chr19:38611800-38642600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr19:38611800-38653000	Weak transcription	Fetal Kidney	kidney
9	chr19:38613800-38641800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr19:38613800-38643200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr19:38613800-38652200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr19:38613800-38652600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr19:38616000-38652600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr19:38616200-38641600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr19:38616600-38642000	Weak transcription	Dnd41	blood
16	chr19:38617000-38652000	Strong transcription	Fetal Intestine Small	intestine
17	chr19:38618200-38651000	Strong transcription	Fetal Intestine Large	intestine
18	chr19:38619600-38647800	Strong transcription	Fetal Stomach	stomach
19	chr19:38621600-38642800	Weak transcription	NHLF	lung
20	chr19:38622600-38641800	Weak transcription	Aorta	Aorta
21	chr19:38623000-38642800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr19:38624400-38652400	Weak transcription	Fetal Thymus	thymus
23	chr19:38626000-38643400	Weak transcription	Placenta	Placenta
24	chr19:38626400-38642000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr19:38626400-38643400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr19:38626400-38652200	Strong transcription	A549	lung
27	chr19:38626600-38643600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr19:38626800-38646000	Weak transcription	HMEC	breast
29	chr19:38627000-38652400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr19:38627600-38642800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr19:38628400-38652600	Weak transcription	Right Atrium	heart
32	chr19:38628600-38645000	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr19:38628800-38645200	Strong transcription	Duodenum Mucosa	Duodenum
34	chr19:38628800-38646400	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr19:38628800-38651200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr19:38629200-38652600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr19:38629600-38651600	Strong transcription	GM12878-XiMat	blood
38	chr19:38633000-38651000	Strong transcription	Primary B cells from cord blood	blood
39	chr19:38633000-38652400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr19:38633200-38652800	Weak transcription	Colon Smooth Muscle	Colon
41	chr19:38633400-38650800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr19:38633400-38653000	Weak transcription	Fetal Brain Male	brain
43	chr19:38634200-38642000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr19:38634200-38642200	Weak transcription	Ovary	ovary
45	chr19:38634200-38643200	Weak transcription	Fetal Lung	lung
46	chr19:38635000-38641600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr19:38635000-38642800	Weak transcription	Right Ventricle	heart
48	chr19:38635200-38641800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr19:38635200-38642800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr19:38635400-38642600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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